# ----------------------------------------------------------------------- # Copyright: 2010-2018, imec Vision Lab, University of Antwerp # 2013-2018, CWI, Amsterdam # # Contact: astra@astra-toolbox.com # Website: http://www.astra-toolbox.com/ # # This file is part of the ASTRA Toolbox. # # # The ASTRA Toolbox is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # The ASTRA Toolbox is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with the ASTRA Toolbox. If not, see . # # ----------------------------------------------------------------------- # # distutils: language = c++ # distutils: libraries = astra include "config.pxi" IF HAVE_CUDA==True: import six from .PyIncludes cimport * from libcpp.vector cimport vector cdef extern from "astra/CompositeGeometryManager.h" namespace "astra::CCompositeGeometryManager::SJob": cdef enum EMode: MODE_ADD = 0 MODE_SET = 1 cdef extern from "astra/CompositeGeometryManager.h" namespace "astra": cdef cppclass CCompositeGeometryManager: bool doFP(CProjector3D *, vector[CFloat32VolumeData3D *], vector[CFloat32ProjectionData3D *], EMode) bool doBP(CProjector3D *, vector[CFloat32VolumeData3D *], vector[CFloat32ProjectionData3D *], EMode) bool doFDK(CProjector3D *, CFloat32VolumeData3D *, CFloat32ProjectionData3D *, bool, const float*, EMode) cdef extern from *: CFloat32VolumeData3D * dynamic_cast_vol_mem "dynamic_cast" (CFloat32Data3D * ) CFloat32ProjectionData3D * dynamic_cast_proj_mem "dynamic_cast" (CFloat32Data3D * ) cdef extern from "astra/Float32ProjectionData3D.h" namespace "astra": cdef cppclass CFloat32ProjectionData3D: bool isInitialized() cdef extern from "astra/Float32VolumeData3D.h" namespace "astra": cdef cppclass CFloat32VolumeData3D: bool isInitialized() cimport PyProjector3DManager from .PyProjector3DManager cimport CProjector3DManager cimport PyData3DManager from .PyData3DManager cimport CData3DManager cdef CProjector3DManager * manProj = PyProjector3DManager.getSingletonPtr() cdef CData3DManager * man3d = PyData3DManager.getSingletonPtr() def do_composite(projector_id, vol_ids, proj_ids, mode, t): cdef vector[CFloat32VolumeData3D *] vol cdef CFloat32VolumeData3D * pVolObject cdef CFloat32ProjectionData3D * pProjObject for v in vol_ids: pVolObject = dynamic_cast_vol_mem(man3d.get(v)) if pVolObject == NULL: raise Exception("Data object not found") if not pVolObject.isInitialized(): raise Exception("Data object not initialized properly") vol.push_back(pVolObject) cdef vector[CFloat32ProjectionData3D *] proj for v in proj_ids: pProjObject = dynamic_cast_proj_mem(man3d.get(v)) if pProjObject == NULL: raise Exception("Data object not found") if not pProjObject.isInitialized(): raise Exception("Data object not initialized properly") proj.push_back(pProjObject) cdef CCompositeGeometryManager m cdef CProjector3D * projector = manProj.get(projector_id) # may be NULL if t == "FP": if not m.doFP(projector, vol, proj, mode): raise Exception("Failed to perform FP") elif t == "BP": if not m.doBP(projector, vol, proj, mode): raise Exception("Failed to perform BP") else: raise RuntimeError("internal error: wrong composite op type") def do_composite_FP(projector_id, vol_ids, proj_ids): do_composite(projector_id, vol_ids, proj_ids, MODE_SET, "FP") def do_composite_BP(projector_id, vol_ids, proj_ids): do_composite(projector_id, vol_ids, proj_ids, MODE_SET, "BP") def accumulate_FP(projector_id, vol_id, proj_id): do_composite(projector_id, [vol_id], [proj_id], MODE_ADD, "FP") def accumulate_BP(projector_id, vol_id, proj_id): do_composite(projector_id, [vol_id], [proj_id], MODE_ADD, "BP") def accumulate_FDK(projector_id, vol_id, proj_id): cdef CFloat32VolumeData3D * pVolObject cdef CFloat32ProjectionData3D * pProjObject pVolObject = dynamic_cast_vol_mem(man3d.get(vol_id)) if pVolObject == NULL: raise Exception("Data object not found") if not pVolObject.isInitialized(): raise Exception("Data object not initialized properly") pProjObject = dynamic_cast_proj_mem(man3d.get(proj_id)) if pProjObject == NULL: raise Exception("Data object not found") if not pProjObject.isInitialized(): raise Exception("Data object not initialized properly") cdef CCompositeGeometryManager m cdef CProjector3D * projector = manProj.get(projector_id) # may be NULL if not m.doFDK(projector, pVolObject, pProjObject, False, NULL, MODE_ADD): raise Exception("Failed to perform FDK") cimport utils from .utils cimport linkVolFromGeometry, linkProjFromGeometry def direct_FPBP3D(projector_id, vol, proj, t): cdef CProjector3D * projector = manProj.get(projector_id) if projector == NULL: raise Exception("Projector not found") cdef CVolumeGeometry3D *pGeometry = projector.getVolumeGeometry() cdef CProjectionGeometry3D *ppGeometry = projector.getProjectionGeometry() cdef CFloat32VolumeData3D * pVol = linkVolFromGeometry(pGeometry, vol) cdef CFloat32ProjectionData3D * pProj = linkProjFromGeometry(ppGeometry, proj) cdef vector[CFloat32VolumeData3D *] vols cdef vector[CFloat32ProjectionData3D *] projs vols.push_back(pVol) projs.push_back(pProj) cdef CCompositeGeometryManager m try: if t == "FP": if not m.doFP(projector, vols, projs, MODE_SET): raise Exception("Failed to perform FP") elif t == "BP": if not m.doBP(projector, vols, projs, MODE_SET): raise Exception("Failed to perform BP") else: raise RuntimeError("internal error: wrong op type") finally: del pVol del pProj def direct_FP3D(projector_id, vol, proj): """Perform a 3D forward projection with pre-allocated input/output. :param projector_id: A 3D projector object handle :type datatype: :class:`int` :param vol: The input data, as either a numpy array, or a GPULink object :type datatype: :class:`numpy.ndarray` or :class:`astra.data3d.GPULink` :param proj: The pre-allocated output data, either numpy array or GPULink :type datatype: :class:`numpy.ndarray` or :class:`astra.data3d.GPULink` """ direct_FPBP3D(projector_id, vol, proj, "FP") def direct_BP3D(projector_id, vol, proj): """Perform a 3D back projection with pre-allocated input/output. :param projector_id: A 3D projector object handle :type datatype: :class:`int` :param vol: The input data, as either a numpy array, or a GPULink object :type datatype: :class:`numpy.ndarray` or :class:`astra.data3d.GPULink` :param proj: The pre-allocated output data, either numpy array or GPULink :type datatype: :class:`numpy.ndarray` or :class:`astra.data3d.GPULink` """ direct_FPBP3D(projector_id, vol, proj, "BP")