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Diffstat (limited to 'python/astra/PyIncludes.pxd')
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diff --git a/python/astra/PyIncludes.pxd b/python/astra/PyIncludes.pxd new file mode 100644 index 0000000..fc5980f --- /dev/null +++ b/python/astra/PyIncludes.pxd @@ -0,0 +1,215 @@ +#----------------------------------------------------------------------- +#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam +# +#Author: Daniel M. Pelt +#Contact: D.M.Pelt@cwi.nl +#Website: http://dmpelt.github.io/pyastratoolbox/ +# +# +#This file is part of the Python interface to the +#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox"). +# +#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify +#it under the terms of the GNU General Public License as published by +#the Free Software Foundation, either version 3 of the License, or +#(at your option) any later version. +# +#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful, +#but WITHOUT ANY WARRANTY; without even the implied warranty of +#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +#GNU General Public License for more details. +# +#You should have received a copy of the GNU General Public License +#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>. +# +#----------------------------------------------------------------------- +from libcpp cimport bool +from libcpp.string cimport string +from .PyXMLDocument cimport XMLNode + +cdef extern from "astra/Globals.h" namespace "astra": + ctypedef float float32 + ctypedef double float64 + ctypedef unsigned short int uint16 + ctypedef signed short int sint16 + ctypedef unsigned char uchar8 + ctypedef signed char schar8 + ctypedef int int32 + ctypedef short int int16 + +cdef extern from "astra/Config.h" namespace "astra": + cdef cppclass Config: + Config() + XMLNode *self + +cdef extern from "astra/VolumeGeometry2D.h" namespace "astra": + cdef cppclass CVolumeGeometry2D: + bool initialize(Config) + int getGridColCount() + int getGridRowCount() + int getGridTotCount() + float32 getWindowLengthX() + float32 getWindowLengthY() + float32 getWindowArea() + float32 getPixelLengthX() + float32 getPixelLengthY() + float32 getPixelArea() + float32 getWindowMinX() + float32 getWindowMinY() + float32 getWindowMaxX() + float32 getWindowMaxY() + + +cdef extern from "astra/Float32VolumeData2D.h" namespace "astra": + cdef cppclass CFloat32VolumeData2D: + CFloat32VolumeData2D(CVolumeGeometry2D*) + CVolumeGeometry2D * getGeometry() + int getWidth() + int getHeight() + void changeGeometry(CVolumeGeometry2D*) + + + +cdef extern from "astra/ProjectionGeometry2D.h" namespace "astra": + cdef cppclass CProjectionGeometry2D: + CProjectionGeometry2D() + bool initialize(Config) + int getDetectorCount() + int getProjectionAngleCount() + bool isOfType(string) + float32 getProjectionAngle(int) + float32 getDetectorWidth() + +cdef extern from "astra/Float32Data2D.h" namespace "astra::CFloat32Data2D": + cdef enum EDataType: + BASE,PROJECTION,VOLUME + +cdef extern from "astra/Float32Data2D.h" namespace "astra": + cdef cppclass CFloat32Data2D: + bool isInitialized() + int getSize() + float32 *getData() + float32 **getData2D() + int getWidth() + int getHeight() + EDataType getType() + + + + +cdef extern from "astra/SparseMatrixProjectionGeometry2D.h" namespace "astra": + cdef cppclass CSparseMatrixProjectionGeometry2D: + CSparseMatrixProjectionGeometry2D() + +cdef extern from "astra/FanFlatProjectionGeometry2D.h" namespace "astra": + cdef cppclass CFanFlatProjectionGeometry2D: + CFanFlatProjectionGeometry2D() + +cdef extern from "astra/FanFlatVecProjectionGeometry2D.h" namespace "astra": + cdef cppclass CFanFlatVecProjectionGeometry2D: + CFanFlatVecProjectionGeometry2D() + +cdef extern from "astra/ParallelProjectionGeometry2D.h" namespace "astra": + cdef cppclass CParallelProjectionGeometry2D: + CParallelProjectionGeometry2D() + + +cdef extern from "astra/Float32ProjectionData2D.h" namespace "astra": + cdef cppclass CFloat32ProjectionData2D: + CFloat32ProjectionData2D(CProjectionGeometry2D*) + CProjectionGeometry2D * getGeometry() + void changeGeometry(CProjectionGeometry2D*) + int getDetectorCount() + int getAngleCount() + +cdef extern from "astra/Algorithm.h" namespace "astra": + cdef cppclass CAlgorithm: + bool initialize(Config) + void run(int) + bool isInitialized() + +cdef extern from "astra/ReconstructionAlgorithm2D.h" namespace "astra": + cdef cppclass CReconstructionAlgorithm2D: + bool getResidualNorm(float32&) + +cdef extern from "astra/Projector2D.h" namespace "astra": + cdef cppclass CProjector2D: + bool isInitialized() + CProjectionGeometry2D* getProjectionGeometry() + CVolumeGeometry2D* getVolumeGeometry() + CSparseMatrix* getMatrix() + +cdef extern from "astra/SparseMatrix.h" namespace "astra": + cdef cppclass CSparseMatrix: + CSparseMatrix(unsigned int,unsigned int,unsigned long) + unsigned int m_iWidth + unsigned int m_iHeight + unsigned long m_lSize + bool isInitialized() + float32* m_pfValues + unsigned int* m_piColIndices + unsigned long* m_plRowStarts + +cdef extern from "astra/Float32Data3DMemory.h" namespace "astra": + cdef cppclass CFloat32Data3DMemory: + CFloat32Data3DMemory() + bool isInitialized() + int getSize() + int getWidth() + int getHeight() + int getDepth() + void updateStatistics() + float32 *getData() + float32 ***getData3D() + + +cdef extern from "astra/VolumeGeometry3D.h" namespace "astra": + cdef cppclass CVolumeGeometry3D: + CVolumeGeometry3D() + bool initialize(Config) + +cdef extern from "astra/ProjectionGeometry3D.h" namespace "astra": + cdef cppclass CProjectionGeometry3D: + CProjectionGeometry3D() + bool initialize(Config) + + +cdef extern from "astra/Float32VolumeData3DMemory.h" namespace "astra": + cdef cppclass CFloat32VolumeData3DMemory: + CFloat32VolumeData3DMemory(CVolumeGeometry3D*) + + +cdef extern from "astra/ParallelProjectionGeometry3D.h" namespace "astra": + cdef cppclass CParallelProjectionGeometry3D: + CParallelProjectionGeometry3D() + +cdef extern from "astra/ParallelVecProjectionGeometry3D.h" namespace "astra": + cdef cppclass CParallelVecProjectionGeometry3D: + CParallelVecProjectionGeometry3D() + +cdef extern from "astra/ConeProjectionGeometry3D.h" namespace "astra": + cdef cppclass CConeProjectionGeometry3D: + CConeProjectionGeometry3D() + bool initialize(Config) + +cdef extern from "astra/ConeVecProjectionGeometry3D.h" namespace "astra": + cdef cppclass CConeVecProjectionGeometry3D: + CConeVecProjectionGeometry3D() + +cdef extern from "astra/Float32ProjectionData3DMemory.h" namespace "astra": + cdef cppclass CFloat32ProjectionData3DMemory: + CFloat32ProjectionData3DMemory(CProjectionGeometry3D*) + CFloat32ProjectionData3DMemory(CConeProjectionGeometry3D*) + +cdef extern from "astra/Float32Data3D.h" namespace "astra": + cdef cppclass CFloat32Data3D: + CFloat32Data3D() + bool isInitialized() + int getSize() + int getWidth() + int getHeight() + int getDepth() + void updateStatistics() + + + |