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-rw-r--r--cuda/2d/astra.cu266
-rw-r--r--cuda/2d/astra.h36
2 files changed, 204 insertions, 98 deletions
diff --git a/cuda/2d/astra.cu b/cuda/2d/astra.cu
index f4d4717..087905d 100644
--- a/cuda/2d/astra.cu
+++ b/cuda/2d/astra.cu
@@ -43,6 +43,10 @@ $Id$
#include <cuda.h>
#include "../../include/astra/Logger.h"
+#include "../../include/astra/VolumeGeometry2D.h"
+#include "../../include/astra/ParallelProjectionGeometry2D.h"
+#include "../../include/astra/FanFlatProjectionGeometry2D.h"
+#include "../../include/astra/FanFlatVecProjectionGeometry2D.h"
// For fan beam FBP weighting
#include "../3d/fdk.h"
@@ -628,7 +632,7 @@ bool astraCudaFP(const float* pfVolume, float* pfSinogram,
unsigned int iProjAngles, unsigned int iProjDets,
const float *pfAngles, const float *pfOffsets,
float fDetSize, unsigned int iDetSuperSampling,
- int iGPUIndex)
+ float fOutputScale, int iGPUIndex)
{
SDimensions dims;
@@ -687,7 +691,7 @@ bool astraCudaFP(const float* pfVolume, float* pfSinogram,
}
zeroProjectionData(D_sinoData, sinoPitch, dims);
- ok = FP(D_volumeData, volumePitch, D_sinoData, sinoPitch, dims, pfAngles, pfOffsets, 1.0f);
+ ok = FP(D_volumeData, volumePitch, D_sinoData, sinoPitch, dims, pfAngles, pfOffsets, fOutputScale);
if (!ok) {
cudaFree(D_volumeData);
cudaFree(D_sinoData);
@@ -711,19 +715,18 @@ bool astraCudaFP(const float* pfVolume, float* pfSinogram,
bool astraCudaFanFP(const float* pfVolume, float* pfSinogram,
unsigned int iVolWidth, unsigned int iVolHeight,
unsigned int iProjAngles, unsigned int iProjDets,
- const float *pfAngles, float fOriginSourceDistance,
- float fOriginDetectorDistance, float fPixelSize,
- float fDetSize,
- unsigned int iDetSuperSampling,
+ const SFanProjection *pAngles,
+ unsigned int iDetSuperSampling, float fOutputScale,
int iGPUIndex)
{
SDimensions dims;
- if (iProjAngles == 0 || iProjDets == 0 || pfAngles == 0)
+ if (iProjAngles == 0 || iProjDets == 0 || pAngles == 0)
return false;
dims.iProjAngles = iProjAngles;
dims.iProjDets = iProjDets;
+ dims.fDetScale = 1.0f; // TODO?
if (iDetSuperSampling == 0)
return false;
@@ -774,27 +777,7 @@ bool astraCudaFanFP(const float* pfVolume, float* pfSinogram,
zeroProjectionData(D_sinoData, sinoPitch, dims);
- // TODO: Turn this geometry conversion into a util function
- SFanProjection* projs = new SFanProjection[dims.iProjAngles];
-
- float fSrcX0 = 0.0f;
- float fSrcY0 = -fOriginSourceDistance / fPixelSize;
- float fDetUX0 = fDetSize / fPixelSize;
- float fDetUY0 = 0.0f;
- float fDetSX0 = dims.iProjDets * fDetUX0 / -2.0f;
- float fDetSY0 = fOriginDetectorDistance / fPixelSize;
-
-#define ROTATE0(name,i,alpha) do { projs[i].f##name##X = f##name##X0 * cos(alpha) - f##name##Y0 * sin(alpha); projs[i].f##name##Y = f##name##X0 * sin(alpha) + f##name##Y0 * cos(alpha); } while(0)
- for (int i = 0; i < dims.iProjAngles; ++i) {
- ROTATE0(Src, i, pfAngles[i]);
- ROTATE0(DetS, i, pfAngles[i]);
- ROTATE0(DetU, i, pfAngles[i]);
- }
-
-#undef ROTATE0
-
- ok = FanFP(D_volumeData, volumePitch, D_sinoData, sinoPitch, dims, projs, 1.0f);
- delete[] projs;
+ ok = FanFP(D_volumeData, volumePitch, D_sinoData, sinoPitch, dims, pAngles, fOutputScale);
if (!ok) {
cudaFree(D_volumeData);
@@ -819,94 +802,205 @@ bool astraCudaFanFP(const float* pfVolume, float* pfSinogram,
}
-bool astraCudaFanFP(const float* pfVolume, float* pfSinogram,
- unsigned int iVolWidth, unsigned int iVolHeight,
- unsigned int iProjAngles, unsigned int iProjDets,
- const SFanProjection *pAngles,
- unsigned int iDetSuperSampling,
- int iGPUIndex)
+bool convertAstraGeometry(const CVolumeGeometry2D* pVolGeom,
+ const CParallelProjectionGeometry2D* pProjGeom,
+ float*& detectorOffsets, float*& projectionAngles,
+ float& detSize, float& outputScale)
{
- SDimensions dims;
+ assert(pVolGeom);
+ assert(pProjGeom);
+ assert(pProjGeom->getProjectionAngles());
- if (iProjAngles == 0 || iProjDets == 0 || pAngles == 0)
- return false;
+ const float EPS = 0.00001f;
- dims.iProjAngles = iProjAngles;
- dims.iProjDets = iProjDets;
- dims.fDetScale = 1.0f; // TODO?
+ int nth = pProjGeom->getProjectionAngleCount();
- if (iDetSuperSampling == 0)
+ // Check if pixels are square
+ if (abs(pVolGeom->getPixelLengthX() - pVolGeom->getPixelLengthY()) > EPS)
return false;
- dims.iRaysPerDet = iDetSuperSampling;
- if (iVolWidth <= 0 || iVolHeight <= 0)
- return false;
+ // Scale volume pixels to 1x1
+ detSize = pProjGeom->getDetectorWidth() / pVolGeom->getPixelLengthX();
- dims.iVolWidth = iVolWidth;
- dims.iVolHeight = iVolHeight;
-
- if (iGPUIndex != -1) {
- cudaSetDevice(iGPUIndex);
- cudaError_t err = cudaGetLastError();
+ // Copy angles
+ float *angles = new float[nth];
+ for (int i = 0; i < nth; ++i)
+ angles[i] = pProjGeom->getProjectionAngles()[i];
+ projectionAngles = angles;
- // Ignore errors caused by calling cudaSetDevice multiple times
- if (err != cudaSuccess && err != cudaErrorSetOnActiveProcess)
- return false;
+ // Check if we need to translate
+ bool offCenter = false;
+ if (abs(pVolGeom->getWindowMinX() + pVolGeom->getWindowMaxX()) > EPS ||
+ abs(pVolGeom->getWindowMinY() + pVolGeom->getWindowMaxY()) > EPS)
+ {
+ offCenter = true;
}
- bool ok;
+ // If there are existing detector offsets, or if we need to translate,
+ // we need to return offsets
+ if (pProjGeom->getExtraDetectorOffset() || offCenter)
+ {
+ float* offset = new float[nth];
+
+ if (pProjGeom->getExtraDetectorOffset()) {
+ for (int i = 0; i < nth; ++i)
+ offset[i] = pProjGeom->getExtraDetectorOffset()[i];
+ } else {
+ for (int i = 0; i < nth; ++i)
+ offset[i] = 0.0f;
+ }
- float* D_volumeData;
- unsigned int volumePitch;
+ if (offCenter) {
+ float dx = (pVolGeom->getWindowMinX() + pVolGeom->getWindowMaxX()) / 2;
+ float dy = (pVolGeom->getWindowMinY() + pVolGeom->getWindowMaxY()) / 2;
- ok = allocateVolumeData(D_volumeData, volumePitch, dims);
- if (!ok)
- return false;
+ // CHECKME: Is d in pixels or in units?
- float* D_sinoData;
- unsigned int sinoPitch;
+ for (int i = 0; i < nth; ++i) {
+ float d = dx * cos(angles[i]) + dy * sin(angles[i]);
+ offset[i] += d;
+ }
+ }
- ok = allocateProjectionData(D_sinoData, sinoPitch, dims);
- if (!ok) {
- cudaFree(D_volumeData);
- return false;
+ // CHECKME: Order of scaling and translation
+
+ // Scale volume pixels to 1x1
+ for (int i = 0; i < nth; ++i) {
+ //offset[i] /= pVolGeom->getPixelLengthX();
+ //offset[i] *= detSize;
+ }
+
+
+ detectorOffsets = offset;
+ } else {
+ detectorOffsets = 0;
}
- ok = copyVolumeToDevice(pfVolume, dims.iVolWidth,
- dims,
- D_volumeData, volumePitch);
- if (!ok) {
- cudaFree(D_volumeData);
- cudaFree(D_sinoData);
- return false;
+ outputScale = pVolGeom->getPixelLengthX();
+ outputScale *= outputScale;
+
+ return true;
+}
+
+static void convertAstraGeometry_internal(const CVolumeGeometry2D* pVolGeom,
+ unsigned int iProjectionAngleCount,
+ astraCUDA::SFanProjection*& pProjs,
+ float& outputScale)
+{
+ // Translate
+ float dx = (pVolGeom->getWindowMinX() + pVolGeom->getWindowMaxX()) / 2;
+ float dy = (pVolGeom->getWindowMinY() + pVolGeom->getWindowMaxY()) / 2;
+
+ for (int i = 0; i < iProjectionAngleCount; ++i) {
+ pProjs[i].fSrcX -= dx;
+ pProjs[i].fSrcY -= dy;
+ pProjs[i].fDetSX -= dx;
+ pProjs[i].fDetSY -= dy;
}
- zeroProjectionData(D_sinoData, sinoPitch, dims);
+ // CHECKME: Order of scaling and translation
- ok = FanFP(D_volumeData, volumePitch, D_sinoData, sinoPitch, dims, pAngles, 1.0f);
+ // Scale
+ float factor = 1.0f / pVolGeom->getPixelLengthX();
+ for (int i = 0; i < iProjectionAngleCount; ++i) {
+ pProjs[i].fSrcX *= factor;
+ pProjs[i].fSrcY *= factor;
+ pProjs[i].fDetSX *= factor;
+ pProjs[i].fDetSY *= factor;
+ pProjs[i].fDetUX *= factor;
+ pProjs[i].fDetUY *= factor;
- if (!ok) {
- cudaFree(D_volumeData);
- cudaFree(D_sinoData);
- return false;
}
- ok = copySinogramFromDevice(pfSinogram, dims.iProjDets,
- dims,
- D_sinoData, sinoPitch);
- if (!ok) {
- cudaFree(D_volumeData);
- cudaFree(D_sinoData);
+ // CHECKME: Check factor
+ outputScale = pVolGeom->getPixelLengthX();
+// outputScale *= outputScale;
+}
+
+
+bool convertAstraGeometry(const CVolumeGeometry2D* pVolGeom,
+ const CFanFlatProjectionGeometry2D* pProjGeom,
+ astraCUDA::SFanProjection*& pProjs,
+ float& outputScale)
+{
+ assert(pVolGeom);
+ assert(pProjGeom);
+ assert(pProjGeom->getProjectionAngles());
+
+ const float EPS = 0.00001f;
+
+ int nth = pProjGeom->getProjectionAngleCount();
+
+ // Check if pixels are square
+ if (abs(pVolGeom->getPixelLengthX() - pVolGeom->getPixelLengthY()) > EPS)
return false;
+
+ // TODO: Deprecate this.
+// if (pProjGeom->getExtraDetectorOffset())
+// return false;
+
+
+ float fOriginSourceDistance = pProjGeom->getOriginSourceDistance();
+ float fOriginDetectorDistance = pProjGeom->getOriginDetectorDistance();
+ float fDetSize = pProjGeom->getDetectorWidth();
+ const float *pfAngles = pProjGeom->getProjectionAngles();
+
+ pProjs = new SFanProjection[nth];
+
+ float fSrcX0 = 0.0f;
+ float fSrcY0 = -fOriginSourceDistance;
+ float fDetUX0 = fDetSize;
+ float fDetUY0 = 0.0f;
+ float fDetSX0 = pProjGeom->getDetectorCount() * fDetUX0 / -2.0f;
+ float fDetSY0 = fOriginDetectorDistance;
+
+#define ROTATE0(name,i,alpha) do { pProjs[i].f##name##X = f##name##X0 * cos(alpha) - f##name##Y0 * sin(alpha); pProjs[i].f##name##Y = f##name##X0 * sin(alpha) + f##name##Y0 * cos(alpha); } while(0)
+ for (int i = 0; i < nth; ++i) {
+ ROTATE0(Src, i, pfAngles[i]);
+ ROTATE0(DetS, i, pfAngles[i]);
+ ROTATE0(DetU, i, pfAngles[i]);
}
- cudaFree(D_volumeData);
- cudaFree(D_sinoData);
+#undef ROTATE0
+
+ convertAstraGeometry_internal(pVolGeom, nth, pProjs, outputScale);
return true;
}
+bool convertAstraGeometry(const CVolumeGeometry2D* pVolGeom,
+ const CFanFlatVecProjectionGeometry2D* pProjGeom,
+ astraCUDA::SFanProjection*& pProjs,
+ float& outputScale)
+{
+ assert(pVolGeom);
+ assert(pProjGeom);
+ assert(pProjGeom->getProjectionVectors());
+
+ const float EPS = 0.00001f;
+
+ int nx = pVolGeom->getGridColCount();
+ int ny = pVolGeom->getGridRowCount();
+ int nth = pProjGeom->getProjectionAngleCount();
+
+ // Check if pixels are square
+ if (abs(pVolGeom->getPixelLengthX() - pVolGeom->getPixelLengthY()) > EPS)
+ return false;
+
+ pProjs = new SFanProjection[nth];
+
+ // Copy vectors
+ for (int i = 0; i < nth; ++i)
+ pProjs[i] = pProjGeom->getProjectionVectors()[i];
+
+ convertAstraGeometry_internal(pVolGeom, nth, pProjs, outputScale);
+
+ return true;
+}
+
+
+
}
diff --git a/cuda/2d/astra.h b/cuda/2d/astra.h
index 42b15e8..d2d7059 100644
--- a/cuda/2d/astra.h
+++ b/cuda/2d/astra.h
@@ -42,6 +42,11 @@ enum Cuda2DProjectionKernel {
ker2d_default = 0
};
+class CParallelProjectionGeometry2D;
+class CFanFlatProjectionGeometry2D;
+class CFanFlatVecProjectionGeometry2D;
+class CVolumeGeometry2D;
+
class AstraFBP_internal;
class _AstraExport AstraFBP {
@@ -195,24 +200,31 @@ _AstraExport bool astraCudaFP(const float* pfVolume, float* pfSinogram,
unsigned int iProjAngles, unsigned int iProjDets,
const float *pfAngles, const float *pfOffsets,
float fDetSize = 1.0f, unsigned int iDetSuperSampling = 1,
- int iGPUIndex = 0);
-
-// Do a single forward projection, fan beam
-_AstraExport bool astraCudaFanFP(const float* pfVolume, float* pfSinogram,
- unsigned int iVolWidth, unsigned int iVolHeight,
- unsigned int iProjAngles, unsigned int iProjDets,
- const float *pfAngles, float fOriginSourceDistance,
- float fOriginDetectorDistance, float fPixelSize = 1.0f,
- float fDetSize = 1.0f,
- unsigned int iDetSuperSampling = 1,
- int iGPUIndex = 0);
+ float fOutputScale = 1.0f, int iGPUIndex = 0);
_AstraExport bool astraCudaFanFP(const float* pfVolume, float* pfSinogram,
unsigned int iVolWidth, unsigned int iVolHeight,
unsigned int iProjAngles, unsigned int iProjDets,
const SFanProjection *pAngles,
unsigned int iDetSuperSampling = 1,
- int iGPUIndex = 0);
+ float fOutputScale = 1.0f, int iGPUIndex = 0);
+
+
+_AstraExport bool convertAstraGeometry(const CVolumeGeometry2D* pVolGeom,
+ const CParallelProjectionGeometry2D* pProjGeom,
+ float*& pfDetectorOffsets, float*& pfProjectionAngles,
+ float& fDetSize, float& fOutputScale);
+
+_AstraExport bool convertAstraGeometry(const CVolumeGeometry2D* pVolGeom,
+ const CFanFlatProjectionGeometry2D* pProjGeom,
+ astraCUDA::SFanProjection*& pProjs,
+ float& outputScale);
+
+_AstraExport bool convertAstraGeometry(const CVolumeGeometry2D* pVolGeom,
+ const CFanFlatVecProjectionGeometry2D* pProjGeom,
+ astraCUDA::SFanProjection*& pProjs,
+ float& outputScale);
+
}
#endif
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