Update version to 1.3

1 files changed, 168 insertions, 0 deletions

diff --git a/src/CudaDartMaskAlgorithm3D.cpp b/src/CudaDartMaskAlgorithm3D.cpp
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+/*
+-----------------------------------------------------------------------
+Copyright 2012 iMinds-Vision Lab, University of Antwerp
+
+Contact: astra@ua.ac.be
+Website: http://astra.ua.ac.be
+
+
+This file is part of the
+All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+#ifdef ASTRA_CUDA
+
+#include "astra/CudaDartMaskAlgorithm3D.h"
+
+#include "../cuda/3d/darthelper3d.h"
+#include "../cuda/3d/dims3d.h"
+
+#include "astra/AstraObjectManager.h"
+#include <boost/lexical_cast.hpp>
+
+using namespace std;
+
+namespace astra {
+
+// type of the algorithm, needed to register with CAlgorithmFactory
+std::string CCudaDartMaskAlgorithm3D::type = "DARTMASK3D_CUDA";
+
+//----------------------------------------------------------------------------------------
+// Constructor
+CCudaDartMaskAlgorithm3D::CCudaDartMaskAlgorithm3D() 
+{
+	m_bIsInitialized = false;
+}
+
+//----------------------------------------------------------------------------------------
+// Destructor
+CCudaDartMaskAlgorithm3D::~CCudaDartMaskAlgorithm3D() 
+{
+
+}
+
+//---------------------------------------------------------------------------------------
+// Initialize - Config
+bool CCudaDartMaskAlgorithm3D::initialize(const Config& _cfg)
+{
+	ASTRA_ASSERT(_cfg.self);
+	ConfigStackCheck<CAlgorithm> CC("CudaDartMaskAlgorithm", this, _cfg);
+
+	// reconstruction data
+	XMLNode* node = _cfg.self->getSingleNode("SegmentationDataId");
+	ASTRA_CONFIG_CHECK(node, "CudaDartMask", "No SegmentationDataId tag specified.");
+	int id = boost::lexical_cast<int>(node->getContent());
+	m_pSegmentation = dynamic_cast<CFloat32VolumeData3DMemory*>(CData3DManager::getSingleton().get(id));
+	ASTRA_DELETE(node);
+	CC.markNodeParsed("SegmentationDataId");
+
+	// reconstruction data
+	node = _cfg.self->getSingleNode("MaskDataId");
+	ASTRA_CONFIG_CHECK(node, "CudaDartMask", "No MaskDataId tag specified.");
+	id = boost::lexical_cast<int>(node->getContent());
+	m_pMask = dynamic_cast<CFloat32VolumeData3DMemory*>(CData3DManager::getSingleton().get(id));
+	ASTRA_DELETE(node);
+	CC.markNodeParsed("MaskDataId");
+
+	// Option: GPU number
+	m_iGPUIndex = (int)_cfg.self->getOptionNumerical("GPUindex", 0);
+	m_iGPUIndex = (int)_cfg.self->getOptionNumerical("GPUIndex", m_iGPUIndex);
+	CC.markOptionParsed("GPUindex");
+	if (!_cfg.self->hasOption("GPUindex"))
+		CC.markOptionParsed("GPUIndex");
+
+    // Option: Connectivity
+	m_iConn = (unsigned int)_cfg.self->getOptionNumerical("Connectivity", 8);
+	CC.markOptionParsed("Connectivity");
+
+	// Option: Threshold
+	m_iThreshold = (unsigned int)_cfg.self->getOptionNumerical("Threshold", 1);
+	CC.markOptionParsed("Threshold");
+
+	// Option: Radius
+	m_iRadius = (unsigned int)_cfg.self->getOptionNumerical("Radius", 1);
+	CC.markOptionParsed("Radius");
+
+	_check();
+
+	if (!m_bIsInitialized)
+		return false;
+
+	return true;
+}
+
+//---------------------------------------------------------------------------------------
+// Initialize - C++
+//bool CCudaDartMaskAlgorithm3D::initialize(CFloat32VolumeData2D* _pSegmentation, int _iConn)
+//{
+//	return false;
+//}
+
+//----------------------------------------------------------------------------------------
+// Iterate
+void CCudaDartMaskAlgorithm3D::run(int _iNrIterations)
+{
+	// check initialized
+	ASTRA_ASSERT(m_bIsInitialized);
+
+	const CVolumeGeometry3D& volgeom = *m_pSegmentation->getGeometry();
+	astraCUDA3d::SDimensions3D dims;
+	dims.iVolX = volgeom.getGridColCount();
+	dims.iVolY = volgeom.getGridRowCount();
+	dims.iVolZ = volgeom.getGridSliceCount();
+
+	astraCUDA3d::setGPUIndex(m_iGPUIndex);
+	astraCUDA3d::dartMasking(m_pMask->getData(), m_pSegmentation->getDataConst(), m_iConn, m_iRadius, m_iThreshold, dims);
+}
+
+//----------------------------------------------------------------------------------------
+// Check
+bool CCudaDartMaskAlgorithm3D::_check() 
+{
+
+	// connectivity: 4 of 8
+
+	// gpuindex >= 0 
+
+
+	// success
+	m_bIsInitialized = true;
+	return true;
+}
+
+//---------------------------------------------------------------------------------------
+// Information - All
+map<string,boost::any> CCudaDartMaskAlgorithm3D::getInformation()
+{
+	map<string,boost::any> res;
+	// TODO: add PDART-specific options
+	return mergeMap<string,boost::any>(CAlgorithm::getInformation(), res);
+}
+
+//---------------------------------------------------------------------------------------
+// Information - Specific
+boost::any CCudaDartMaskAlgorithm3D::getInformation(std::string _sIdentifier)
+{
+	return NULL;
+}
+
+
+} // namespace astra
+
+#endif // ASTRA_CUDA