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| author | Willem Jan Palenstijn <wjp@usecode.org> | 2016-01-19 16:41:55 +0100 |
|---|---|---|
| committer | Willem Jan Palenstijn <wjp@usecode.org> | 2016-01-19 16:41:55 +0100 |
| commit | d6c0f64358a75565e70905d11c47511329ec3c53 (patch) | |
| tree | 0fabacde181c23430558525c5d4da95f20813139 /python/docSRC | |
| parent | 0f04d14a4a64ee82646558618cdfbf67bf1c2be0 (diff) | |
| parent | d9544b4abd36a6fd955d61b9f501d796705e1b93 (diff) | |
| download | astra-d6c0f64358a75565e70905d11c47511329ec3c53.tar.gz astra-d6c0f64358a75565e70905d11c47511329ec3c53.tar.bz2 astra-d6c0f64358a75565e70905d11c47511329ec3c53.tar.xz astra-d6c0f64358a75565e70905d11c47511329ec3c53.zip | |
Merge pull request #108 from dmpelt/readthedocs
Move documentation to readthedocs
Diffstat (limited to 'python/docSRC')
87 files changed, 0 insertions, 9949 deletions
diff --git a/python/docSRC/Makefile b/python/docSRC/Makefile deleted file mode 100644 index a005bab..0000000 --- a/python/docSRC/Makefile +++ /dev/null @@ -1,153 +0,0 @@ -# Makefile for Sphinx documentation -# - -# You can set these variables from the command line. -SPHINXOPTS = -SPHINXBUILD = sphinx-build -PAPER = -BUILDDIR = _build - -# Internal variables. -PAPEROPT_a4 = -D latex_paper_size=a4 -PAPEROPT_letter = -D latex_paper_size=letter -ALLSPHINXOPTS = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) . -# the i18n builder cannot share the environment and doctrees with the others -I18NSPHINXOPTS = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) . - -.PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest gettext - -help: - @echo "Please use \`make <target>' where <target> is one of" - @echo " html to make standalone HTML files" - @echo " dirhtml to make HTML files named index.html in directories" - @echo " singlehtml to make a single large HTML file" - @echo " pickle to make pickle files" - @echo " json to make JSON files" - @echo " htmlhelp to make HTML files and a HTML help project" - @echo " qthelp to make HTML files and a qthelp project" - @echo " devhelp to make HTML files and a Devhelp project" - @echo " epub to make an epub" - @echo " latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter" - @echo " latexpdf to make LaTeX files and run them through pdflatex" - @echo " text to make text files" - @echo " man to make manual pages" - @echo " texinfo to make Texinfo files" - @echo " info to make Texinfo files and run them through makeinfo" - @echo " gettext to make PO message catalogs" - @echo " changes to make an overview of all changed/added/deprecated items" - @echo " linkcheck to check all external links for integrity" - @echo " doctest to run all doctests embedded in the documentation (if enabled)" - -clean: - -rm -rf $(BUILDDIR)/* - -html: - $(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html - @echo - @echo "Build finished. The HTML pages are in $(BUILDDIR)/html." - -dirhtml: - $(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml - @echo - @echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml." - -singlehtml: - $(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml - @echo - @echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml." - -pickle: - $(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle - @echo - @echo "Build finished; now you can process the pickle files." - -json: - $(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json - @echo - @echo "Build finished; now you can process the JSON files." - -htmlhelp: - $(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp - @echo - @echo "Build finished; now you can run HTML Help Workshop with the" \ - ".hhp project file in $(BUILDDIR)/htmlhelp." - -qthelp: - $(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp - @echo - @echo "Build finished; now you can run "qcollectiongenerator" with the" \ - ".qhcp project file in $(BUILDDIR)/qthelp, like this:" - @echo "# qcollectiongenerator $(BUILDDIR)/qthelp/.qhcp" - @echo "To view the help file:" - @echo "# assistant -collectionFile $(BUILDDIR)/qthelp/.qhc" - -devhelp: - $(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp - @echo - @echo "Build finished." - @echo "To view the help file:" - @echo "# mkdir -p $$HOME/.local/share/devhelp/" - @echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/" - @echo "# devhelp" - -epub: - $(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub - @echo - @echo "Build finished. The epub file is in $(BUILDDIR)/epub." - -latex: - $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex - @echo - @echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex." - @echo "Run \`make' in that directory to run these through (pdf)latex" \ - "(use \`make latexpdf' here to do that automatically)." - -latexpdf: - $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex - @echo "Running LaTeX files through pdflatex..." - $(MAKE) -C $(BUILDDIR)/latex all-pdf - @echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex." - -text: - $(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text - @echo - @echo "Build finished. The text files are in $(BUILDDIR)/text." - -man: - $(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man - @echo - @echo "Build finished. The manual pages are in $(BUILDDIR)/man." - -texinfo: - $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo - @echo - @echo "Build finished. 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The message catalogs are in $(BUILDDIR)/locale." - -changes: - $(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes - @echo - @echo "The overview file is in $(BUILDDIR)/changes." - -linkcheck: - $(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck - @echo - @echo "Link check complete; look for any errors in the above output " \ - "or in $(BUILDDIR)/linkcheck/output.txt." - -doctest: - $(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest - @echo "Testing of doctests in the sources finished, look at the " \ - "results in $(BUILDDIR)/doctest/output.txt." diff --git a/python/docSRC/_build/doctrees/ASTRAProjector.doctree b/python/docSRC/_build/doctrees/ASTRAProjector.doctree Binary files differdeleted file mode 100644 index c93e5bb..0000000 --- a/python/docSRC/_build/doctrees/ASTRAProjector.doctree +++ /dev/null diff --git a/python/docSRC/_build/doctrees/algorithm.doctree b/python/docSRC/_build/doctrees/algorithm.doctree Binary files differdeleted file mode 100644 index 1cb6d80..0000000 --- a/python/docSRC/_build/doctrees/algorithm.doctree +++ /dev/null diff --git a/python/docSRC/_build/doctrees/astra.doctree b/python/docSRC/_build/doctrees/astra.doctree Binary files differdeleted file mode 100644 index 948d05e..0000000 --- a/python/docSRC/_build/doctrees/astra.doctree +++ /dev/null diff --git a/python/docSRC/_build/doctrees/creators.doctree b/python/docSRC/_build/doctrees/creators.doctree Binary files differdeleted file mode 100644 index 72c82fd..0000000 --- a/python/docSRC/_build/doctrees/creators.doctree +++ /dev/null diff --git a/python/docSRC/_build/doctrees/data2d.doctree b/python/docSRC/_build/doctrees/data2d.doctree Binary files differdeleted file mode 100644 index bfe67d5..0000000 --- a/python/docSRC/_build/doctrees/data2d.doctree +++ /dev/null diff --git a/python/docSRC/_build/doctrees/data3d.doctree b/python/docSRC/_build/doctrees/data3d.doctree Binary files differdeleted file mode 100644 index 4025c09..0000000 --- a/python/docSRC/_build/doctrees/data3d.doctree +++ /dev/null diff --git a/python/docSRC/_build/doctrees/environment.pickle b/python/docSRC/_build/doctrees/environment.pickle Binary files differdeleted file mode 100644 index d17f654..0000000 --- a/python/docSRC/_build/doctrees/environment.pickle +++ /dev/null diff --git a/python/docSRC/_build/doctrees/functions.doctree b/python/docSRC/_build/doctrees/functions.doctree Binary files differdeleted file mode 100644 index 9ee097d..0000000 --- a/python/docSRC/_build/doctrees/functions.doctree +++ /dev/null diff --git a/python/docSRC/_build/doctrees/index.doctree b/python/docSRC/_build/doctrees/index.doctree Binary files differdeleted file mode 100644 index f0925c9..0000000 --- a/python/docSRC/_build/doctrees/index.doctree +++ /dev/null diff --git a/python/docSRC/_build/doctrees/matlab.doctree b/python/docSRC/_build/doctrees/matlab.doctree Binary files differdeleted file mode 100644 index fc443e9..0000000 --- a/python/docSRC/_build/doctrees/matlab.doctree +++ /dev/null diff --git a/python/docSRC/_build/doctrees/matrix.doctree b/python/docSRC/_build/doctrees/matrix.doctree Binary files differdeleted file mode 100644 index 847c0c7..0000000 --- a/python/docSRC/_build/doctrees/matrix.doctree +++ /dev/null diff --git a/python/docSRC/_build/doctrees/projector.doctree b/python/docSRC/_build/doctrees/projector.doctree Binary files differdeleted file mode 100644 index cb7e640..0000000 --- a/python/docSRC/_build/doctrees/projector.doctree +++ /dev/null diff --git a/python/docSRC/_build/html/.buildinfo b/python/docSRC/_build/html/.buildinfo deleted file mode 100644 index aecd9dc..0000000 --- a/python/docSRC/_build/html/.buildinfo +++ /dev/null @@ -1,4 +0,0 @@ -# Sphinx build info version 1 -# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. -config: 613726d7ead289eb5bc59a5d50e806e0 -tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/python/docSRC/_build/html/ASTRAProjector.html b/python/docSRC/_build/html/ASTRAProjector.html deleted file mode 100644 index 61c6a2f..0000000 --- a/python/docSRC/_build/html/ASTRAProjector.html +++ /dev/null @@ -1,235 +0,0 @@ -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" - "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> - - -<html xmlns="http://www.w3.org/1999/xhtml"> - <head> - <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> - - <title>Helper class: the ASTRAProjector module — PyASTRAToolbox 1.6 documentation</title> - - <link rel="stylesheet" href="_static/default.css" type="text/css" /> - <link rel="stylesheet" href="_static/pygments.css" type="text/css" /> - - <script type="text/javascript"> - var DOCUMENTATION_OPTIONS = { - URL_ROOT: './', - VERSION: '1.6', - COLLAPSE_INDEX: false, - FILE_SUFFIX: '.html', - HAS_SOURCE: true - }; - </script> - <script type="text/javascript" src="_static/jquery.js"></script> - <script type="text/javascript" src="_static/underscore.js"></script> - <script type="text/javascript" src="_static/doctools.js"></script> - <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script> - <link rel="top" title="PyASTRAToolbox 1.6 documentation" href="index.html" /> - <link rel="next" title="MATLAB compatibility interface: the matlab module" href="matlab.html" /> - <link rel="prev" title="Additional functions: the functions module" href="functions.html" /> - </head> - <body> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="genindex.html" title="General Index" - accesskey="I">index</a></li> - <li class="right" > - <a href="py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li class="right" > - <a href="matlab.html" title="MATLAB compatibility interface: the matlab module" - accesskey="N">next</a> |</li> - <li class="right" > - <a href="functions.html" title="Additional functions: the functions module" - accesskey="P">previous</a> |</li> - <li><a href="index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - </ul> - </div> - - <div class="document"> - <div class="documentwrapper"> - <div class="bodywrapper"> - <div class="body"> - - <div class="section" id="module-astra.ASTRAProjector"> -<span id="helper-class-the-astraprojector-module"></span><h1>Helper class: the <tt class="xref py py-mod docutils literal"><span class="pre">ASTRAProjector</span></tt> module<a class="headerlink" href="#module-astra.ASTRAProjector" title="Permalink to this headline">¶</a></h1> -<dl class="class"> -<dt id="astra.ASTRAProjector.ASTRAProjector2D"> -<em class="property">class </em><tt class="descclassname">astra.ASTRAProjector.</tt><tt class="descname">ASTRAProjector2D</tt><big>(</big><em>proj_geom</em>, <em>vol_geom</em>, <em>proj_type</em>, <em>useCUDA=False</em><big>)</big><a class="reference internal" href="_modules/astra/ASTRAProjector.html#ASTRAProjector2D"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.ASTRAProjector.ASTRAProjector2D" title="Permalink to this definition">¶</a></dt> -<dd><p>Bases: <tt class="xref py py-class docutils literal"><span class="pre">builtins.object</span></tt></p> -<p>Helps with various common ASTRA Toolbox 2D operations.</p> -<p>This class can perform several often used toolbox operations, such as:</p> -<ul class="simple"> -<li>Forward projecting</li> -<li>Back projecting</li> -<li>Reconstructing</li> -</ul> -<p>Note that this class has a some computational overhead, because it -copies a lot of data. If you use many repeated operations, directly -using the PyAstraToolbox methods directly is faster.</p> -<p>You can use this class as an abstracted weight matrix <span class="math">\(W\)</span>: multiplying an instance -<tt class="docutils literal"><span class="pre">proj</span></tt> of this class by an image results in a forward projection of the image, and multiplying -<tt class="docutils literal"><span class="pre">proj.T</span></tt> by a sinogram results in a backprojection of the sinogram:</p> -<div class="highlight-python"><div class="highlight"><pre><span class="n">proj</span> <span class="o">=</span> <span class="n">ASTRAProjector2D</span><span class="p">(</span><span class="o">...</span><span class="p">)</span> -<span class="n">fp</span> <span class="o">=</span> <span class="n">proj</span><span class="o">*</span><span class="n">image</span> -<span class="n">bp</span> <span class="o">=</span> <span class="n">proj</span><span class="o">.</span><span class="n">T</span><span class="o">*</span><span class="n">sinogram</span> -</pre></div> -</div> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple"> -<li><strong>proj_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) – The projection geometry.</li> -<li><strong>vol_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) – The volume geometry.</li> -<li><strong>proj_type</strong> (<tt class="xref py py-class docutils literal"><span class="pre">string</span></tt>) – Projector type, such as <tt class="docutils literal"><span class="pre">'line'</span></tt>, <tt class="docutils literal"><span class="pre">'linear'</span></tt>, ...</li> -<li><strong>useCUDA</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a>) – If <tt class="docutils literal"><span class="pre">True</span></tt>, use CUDA for calculations, when possible.</li> -</ul> -</td> -</tr> -</tbody> -</table> -<dl class="method"> -<dt id="astra.ASTRAProjector.ASTRAProjector2D.backProject"> -<tt class="descname">backProject</tt><big>(</big><em>data</em><big>)</big><a class="reference internal" href="_modules/astra/ASTRAProjector.html#ASTRAProjector2D.backProject"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.ASTRAProjector.ASTRAProjector2D.backProject" title="Permalink to this definition">¶</a></dt> -<dd><p>Backproject a sinogram.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>data</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – The sinogram data or ID.</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> – The backprojection.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="method"> -<dt id="astra.ASTRAProjector.ASTRAProjector2D.forwardProject"> -<tt class="descname">forwardProject</tt><big>(</big><em>data</em><big>)</big><a class="reference internal" href="_modules/astra/ASTRAProjector.html#ASTRAProjector2D.forwardProject"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.ASTRAProjector.ASTRAProjector2D.forwardProject" title="Permalink to this definition">¶</a></dt> -<dd><p>Forward project an image.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>data</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – The image data or ID.</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> – The forward projection.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="method"> -<dt id="astra.ASTRAProjector.ASTRAProjector2D.reconstruct"> -<tt class="descname">reconstruct</tt><big>(</big><em>data</em>, <em>method</em>, <em>**kwargs</em><big>)</big><a class="reference internal" href="_modules/astra/ASTRAProjector.html#ASTRAProjector2D.reconstruct"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.ASTRAProjector.ASTRAProjector2D.reconstruct" title="Permalink to this definition">¶</a></dt> -<dd><p>Reconstruct an image from a sinogram.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> -<li><strong>data</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – The sinogram data or ID.</li> -<li><strong>method</strong> (<tt class="xref py py-class docutils literal"><span class="pre">string</span></tt>) – Name of the reconstruction algorithm.</li> -<li><strong>kwargs</strong> – Additional named parameters to pass to <a class="reference internal" href="creators.html#astra.creators.create_reconstruction" title="astra.creators.create_reconstruction"><tt class="xref py py-func docutils literal"><span class="pre">astra.creators.create_reconstruction()</span></tt></a>.</li> -</ul> -</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> – The reconstruction.</p> -</td> -</tr> -</tbody> -</table> -<p>Example of a SIRT reconstruction using CUDA:</p> -<div class="highlight-python"><div class="highlight"><pre><span class="n">proj</span> <span class="o">=</span> <span class="n">ASTRAProjector2D</span><span class="p">(</span><span class="o">...</span><span class="p">)</span> -<span class="n">rec</span> <span class="o">=</span> <span class="n">proj</span><span class="o">.</span><span class="n">reconstruct</span><span class="p">(</span><span class="n">sinogram</span><span class="p">,</span><span class="s">'SIRT_CUDA'</span><span class="p">,</span><span class="n">iterations</span><span class="o">=</span><span class="mi">1000</span><span class="p">)</span> -</pre></div> -</div> -</dd></dl> - -</dd></dl> - -<dl class="class"> -<dt id="astra.ASTRAProjector.ASTRAProjector2DTranspose"> -<em class="property">class </em><tt class="descclassname">astra.ASTRAProjector.</tt><tt class="descname">ASTRAProjector2DTranspose</tt><big>(</big><em>parentProj</em><big>)</big><a class="reference internal" href="_modules/astra/ASTRAProjector.html#ASTRAProjector2DTranspose"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.ASTRAProjector.ASTRAProjector2DTranspose" title="Permalink to this definition">¶</a></dt> -<dd><p>Bases: <tt class="xref py py-class docutils literal"><span class="pre">builtins.object</span></tt></p> -<p>Implements the <tt class="docutils literal"><span class="pre">proj.T</span></tt> functionality.</p> -<p>Do not use directly, since it can be accessed as member <tt class="docutils literal"><span class="pre">.T</span></tt> of -an <a class="reference internal" href="#astra.ASTRAProjector.ASTRAProjector2D" title="astra.ASTRAProjector.ASTRAProjector2D"><tt class="xref py py-class docutils literal"><span class="pre">ASTRAProjector2D</span></tt></a> object.</p> -</dd></dl> - 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\ No newline at end of file diff --git a/python/docSRC/_build/html/_modules/astra/ASTRAProjector.html b/python/docSRC/_build/html/_modules/astra/ASTRAProjector.html deleted file mode 100644 index 08789f2..0000000 --- a/python/docSRC/_build/html/_modules/astra/ASTRAProjector.html +++ /dev/null @@ -1,243 +0,0 @@ -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" - "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> - - -<html xmlns="http://www.w3.org/1999/xhtml"> - <head> - <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> - - <title>astra.ASTRAProjector — PyASTRAToolbox 1.6 documentation</title> - - <link rel="stylesheet" href="../../_static/default.css" type="text/css" /> - <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" /> - - <script type="text/javascript"> - var DOCUMENTATION_OPTIONS = { - URL_ROOT: '../../', - VERSION: '1.6', - COLLAPSE_INDEX: false, - FILE_SUFFIX: '.html', - HAS_SOURCE: true - }; - </script> - <script type="text/javascript" src="../../_static/jquery.js"></script> - <script type="text/javascript" src="../../_static/underscore.js"></script> - <script type="text/javascript" src="../../_static/doctools.js"></script> - <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script> - <link rel="top" title="PyASTRAToolbox 1.6 documentation" href="../../index.html" /> - <link rel="up" title="Module code" href="../index.html" /> - </head> - <body> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="../../genindex.html" title="General Index" - accesskey="I">index</a></li> - <li class="right" > - <a href="../../py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li><a href="../../index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - <li><a href="../index.html" accesskey="U">Module code</a> »</li> - </ul> - </div> - - <div class="document"> - <div class="documentwrapper"> - <div class="bodywrapper"> - <div class="body"> - - <h1>Source code for astra.ASTRAProjector</h1><div class="highlight"><pre> -<span class="c">#-----------------------------------------------------------------------</span> -<span class="c">#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam</span> -<span class="c">#</span> -<span class="c">#Author: Daniel M. Pelt</span> -<span class="c">#Contact: D.M.Pelt@cwi.nl</span> -<span class="c">#Website: http://dmpelt.github.io/pyastratoolbox/</span> -<span class="c">#</span> -<span class="c">#</span> -<span class="c">#This file is part of the Python interface to the</span> -<span class="c">#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").</span> -<span class="c">#</span> -<span class="c">#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify</span> -<span class="c">#it under the terms of the GNU General Public License as published by</span> -<span class="c">#the Free Software Foundation, either version 3 of the License, or</span> -<span class="c">#(at your option) any later version.</span> -<span class="c">#</span> -<span class="c">#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,</span> -<span class="c">#but WITHOUT ANY WARRANTY; without even the implied warranty of</span> -<span class="c">#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span> -<span class="c">#GNU General Public License for more details.</span> -<span class="c">#</span> -<span class="c">#You should have received a copy of the GNU General Public License</span> -<span class="c">#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.</span> -<span class="c">#</span> -<span class="c">#-----------------------------------------------------------------------</span> - -<span class="kn">import</span> <span class="nn">math</span> -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">creators</span> <span class="k">as</span> <span class="n">ac</span> -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">data2d</span> - - -<div class="viewcode-block" id="ASTRAProjector2DTranspose"><a class="viewcode-back" href="../../ASTRAProjector.html#astra.ASTRAProjector.ASTRAProjector2DTranspose">[docs]</a><span class="k">class</span> <span class="nc">ASTRAProjector2DTranspose</span><span class="p">():</span> - <span class="sd">"""Implements the ``proj.T`` functionality.</span> - -<span class="sd"> Do not use directly, since it can be accessed as member ``.T`` of</span> -<span class="sd"> an :class:`ASTRAProjector2D` object.</span> - -<span class="sd"> """</span> - <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">parentProj</span><span class="p">):</span> - <span class="bp">self</span><span class="o">.</span><span class="n">parentProj</span> <span class="o">=</span> <span class="n">parentProj</span> - - <span class="k">def</span> <span class="nf">__mul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">data</span><span class="p">):</span> - <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">parentProj</span><span class="o">.</span><span class="n">backProject</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> - -</div> -<div class="viewcode-block" id="ASTRAProjector2D"><a class="viewcode-back" href="../../ASTRAProjector.html#astra.ASTRAProjector.ASTRAProjector2D">[docs]</a><span class="k">class</span> <span class="nc">ASTRAProjector2D</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span> - <span class="sd">"""Helps with various common ASTRA Toolbox 2D operations.</span> - -<span class="sd"> This class can perform several often used toolbox operations, such as:</span> - -<span class="sd"> * Forward projecting</span> -<span class="sd"> * Back projecting</span> -<span class="sd"> * Reconstructing</span> - -<span class="sd"> Note that this class has a some computational overhead, because it</span> -<span class="sd"> copies a lot of data. If you use many repeated operations, directly</span> -<span class="sd"> using the PyAstraToolbox methods directly is faster.</span> - -<span class="sd"> You can use this class as an abstracted weight matrix :math:`W`: multiplying an instance</span> -<span class="sd"> ``proj`` of this class by an image results in a forward projection of the image, and multiplying</span> -<span class="sd"> ``proj.T`` by a sinogram results in a backprojection of the sinogram::</span> - -<span class="sd"> proj = ASTRAProjector2D(...)</span> -<span class="sd"> fp = proj*image</span> -<span class="sd"> bp = proj.T*sinogram</span> - -<span class="sd"> :param proj_geom: The projection geometry.</span> -<span class="sd"> :type proj_geom: :class:`dict`</span> -<span class="sd"> :param vol_geom: The volume geometry.</span> -<span class="sd"> :type vol_geom: :class:`dict`</span> -<span class="sd"> :param proj_type: Projector type, such as ``'line'``, ``'linear'``, ...</span> -<span class="sd"> :type proj_type: :class:`string`</span> -<span class="sd"> :param useCUDA: If ``True``, use CUDA for calculations, when possible.</span> -<span class="sd"> :type useCUDA: :class:`bool`</span> -<span class="sd"> """</span> - - <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">,</span> <span class="n">proj_type</span><span class="p">,</span> <span class="n">useCUDA</span><span class="o">=</span><span class="bp">False</span><span class="p">):</span> - <span class="bp">self</span><span class="o">.</span><span class="n">vol_geom</span> <span class="o">=</span> <span class="n">vol_geom</span> - <span class="bp">self</span><span class="o">.</span><span class="n">recSize</span> <span class="o">=</span> <span class="n">vol_geom</span><span class="p">[</span><span class="s">'GridColCount'</span><span class="p">]</span> - <span class="bp">self</span><span class="o">.</span><span class="n">angles</span> <span class="o">=</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'ProjectionAngles'</span><span class="p">]</span> - <span class="bp">self</span><span class="o">.</span><span class="n">nDet</span> <span class="o">=</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DetectorCount'</span><span class="p">]</span> - <span class="n">nexpow</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">pow</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="n">math</span><span class="o">.</span><span class="n">ceil</span><span class="p">(</span><span class="n">math</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">nDet</span><span class="p">,</span> <span class="mi">2</span><span class="p">))))</span> - <span class="bp">self</span><span class="o">.</span><span class="n">filterSize</span> <span class="o">=</span> <span class="n">nexpow</span> <span class="o">/</span> <span class="mi">2</span> <span class="o">+</span> <span class="mi">1</span> - <span class="bp">self</span><span class="o">.</span><span class="n">nProj</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">angles</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> - <span class="bp">self</span><span class="o">.</span><span class="n">proj_geom</span> <span class="o">=</span> <span class="n">proj_geom</span> - <span class="bp">self</span><span class="o">.</span><span class="n">proj_id</span> <span class="o">=</span> <span class="n">ac</span><span class="o">.</span><span class="n">create_projector</span><span class="p">(</span><span class="n">proj_type</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">)</span> - <span class="bp">self</span><span class="o">.</span><span class="n">useCUDA</span> <span class="o">=</span> <span class="n">useCUDA</span> - <span class="bp">self</span><span class="o">.</span><span class="n">T</span> <span class="o">=</span> <span class="n">ASTRAProjector2DTranspose</span><span class="p">(</span><span class="bp">self</span><span class="p">)</span> - -<div class="viewcode-block" id="ASTRAProjector2D.backProject"><a class="viewcode-back" href="../../ASTRAProjector.html#astra.ASTRAProjector.ASTRAProjector2D.backProject">[docs]</a> <span class="k">def</span> <span class="nf">backProject</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">data</span><span class="p">):</span> - <span class="sd">"""Backproject a sinogram.</span> - -<span class="sd"> :param data: The sinogram data or ID.</span> -<span class="sd"> :type data: :class:`numpy.ndarray` or :class:`int`</span> -<span class="sd"> :returns: :class:`numpy.ndarray` -- The backprojection.</span> - -<span class="sd"> """</span> - <span class="n">vol_id</span><span class="p">,</span> <span class="n">vol</span> <span class="o">=</span> <span class="n">ac</span><span class="o">.</span><span class="n">create_backprojection</span><span class="p">(</span> - <span class="n">data</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">proj_id</span><span class="p">,</span> <span class="n">useCUDA</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">useCUDA</span><span class="p">,</span> <span class="n">returnData</span><span class="o">=</span><span class="bp">True</span><span class="p">)</span> - <span class="n">data2d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">vol_id</span><span class="p">)</span> - <span class="k">return</span> <span class="n">vol</span> -</div> -<div class="viewcode-block" id="ASTRAProjector2D.forwardProject"><a class="viewcode-back" href="../../ASTRAProjector.html#astra.ASTRAProjector.ASTRAProjector2D.forwardProject">[docs]</a> <span class="k">def</span> <span class="nf">forwardProject</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">data</span><span class="p">):</span> - <span class="sd">"""Forward project an image.</span> - -<span class="sd"> :param data: The image data or ID.</span> -<span class="sd"> :type data: :class:`numpy.ndarray` or :class:`int`</span> -<span class="sd"> :returns: :class:`numpy.ndarray` -- The forward projection.</span> - -<span class="sd"> """</span> - <span class="n">sin_id</span><span class="p">,</span> <span class="n">sino</span> <span class="o">=</span> <span class="n">ac</span><span class="o">.</span><span class="n">create_sino</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">proj_id</span><span class="p">,</span> <span class="n">useCUDA</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">useCUDA</span><span class="p">,</span> <span class="n">returnData</span><span class="o">=</span><span class="bp">True</span><span class="p">)</span> - <span class="n">data2d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">sin_id</span><span class="p">)</span> - <span class="k">return</span> <span class="n">sino</span> -</div> -<div class="viewcode-block" id="ASTRAProjector2D.reconstruct"><a class="viewcode-back" href="../../ASTRAProjector.html#astra.ASTRAProjector.ASTRAProjector2D.reconstruct">[docs]</a> <span class="k">def</span> <span class="nf">reconstruct</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">method</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span> - <span class="sd">"""Reconstruct an image from a sinogram.</span> - -<span class="sd"> :param data: The sinogram data or ID.</span> -<span class="sd"> :type data: :class:`numpy.ndarray` or :class:`int`</span> -<span class="sd"> :param method: Name of the reconstruction algorithm.</span> -<span class="sd"> :type method: :class:`string`</span> -<span class="sd"> :param kwargs: Additional named parameters to pass to :func:`astra.creators.create_reconstruction`.</span> -<span class="sd"> :returns: :class:`numpy.ndarray` -- The reconstruction.</span> - -<span class="sd"> Example of a SIRT reconstruction using CUDA::</span> - -<span class="sd"> proj = ASTRAProjector2D(...)</span> -<span class="sd"> rec = proj.reconstruct(sinogram,'SIRT_CUDA',iterations=1000)</span> - -<span class="sd"> """</span> - <span class="n">kwargs</span><span class="p">[</span><span class="s">'returnData'</span><span class="p">]</span> <span class="o">=</span> <span class="bp">True</span> - <span class="n">rec_id</span><span class="p">,</span> <span class="n">rec</span> <span class="o">=</span> <span class="n">ac</span><span class="o">.</span><span class="n">create_reconstruction</span><span class="p">(</span> - <span class="n">method</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">proj_id</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span> - <span class="n">data2d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">rec_id</span><span class="p">)</span> - <span class="k">return</span> <span class="n">rec</span> -</div> - <span class="k">def</span> <span class="nf">__mul__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">data</span><span class="p">):</span> - <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">forwardProject</span><span class="p">(</span><span class="n">data</span><span class="p">)</span></div> -</pre></div> - - </div> - </div> - </div> - <div class="sphinxsidebar"> - <div class="sphinxsidebarwrapper"> -<div id="searchbox" style="display: none"> - <h3>Quick search</h3> - <form class="search" action="../../search.html" method="get"> - <input type="text" name="q" /> - <input type="submit" value="Go" /> - <input type="hidden" name="check_keywords" value="yes" /> - <input type="hidden" name="area" value="default" /> - </form> - <p class="searchtip" style="font-size: 90%"> - Enter search terms or a module, class or function name. - 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\ No newline at end of file diff --git a/python/docSRC/_build/html/_modules/astra/algorithm.html b/python/docSRC/_build/html/_modules/astra/algorithm.html deleted file mode 100644 index 39816fd..0000000 --- a/python/docSRC/_build/html/_modules/astra/algorithm.html +++ /dev/null @@ -1,181 +0,0 @@ -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" - "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> - - -<html xmlns="http://www.w3.org/1999/xhtml"> - <head> - <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> - - <title>astra.algorithm — PyASTRAToolbox 1.6 documentation</title> - - <link rel="stylesheet" href="../../_static/default.css" type="text/css" /> - <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" /> - - <script type="text/javascript"> - var DOCUMENTATION_OPTIONS = { - URL_ROOT: '../../', - VERSION: '1.6', - COLLAPSE_INDEX: false, - FILE_SUFFIX: '.html', - HAS_SOURCE: true - }; - </script> - <script type="text/javascript" src="../../_static/jquery.js"></script> - <script type="text/javascript" src="../../_static/underscore.js"></script> - <script type="text/javascript" src="../../_static/doctools.js"></script> - <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script> - <link rel="top" title="PyASTRAToolbox 1.6 documentation" href="../../index.html" /> - <link rel="up" title="Module code" href="../index.html" /> - </head> - <body> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="../../genindex.html" title="General Index" - accesskey="I">index</a></li> - <li class="right" > - <a href="../../py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li><a href="../../index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - <li><a href="../index.html" accesskey="U">Module code</a> »</li> - </ul> - </div> - - <div class="document"> - <div class="documentwrapper"> - <div class="bodywrapper"> - <div class="body"> - - <h1>Source code for astra.algorithm</h1><div class="highlight"><pre> -<span class="c">#-----------------------------------------------------------------------</span> -<span class="c">#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam</span> -<span class="c">#</span> -<span class="c">#Author: Daniel M. Pelt</span> -<span class="c">#Contact: D.M.Pelt@cwi.nl</span> -<span class="c">#Website: http://dmpelt.github.io/pyastratoolbox/</span> -<span class="c">#</span> -<span class="c">#</span> -<span class="c">#This file is part of the Python interface to the</span> -<span class="c">#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").</span> -<span class="c">#</span> -<span class="c">#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify</span> -<span class="c">#it under the terms of the GNU General Public License as published by</span> -<span class="c">#the Free Software Foundation, either version 3 of the License, or</span> -<span class="c">#(at your option) any later version.</span> -<span class="c">#</span> -<span class="c">#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,</span> -<span class="c">#but WITHOUT ANY WARRANTY; without even the implied warranty of</span> -<span class="c">#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span> -<span class="c">#GNU General Public License for more details.</span> -<span class="c">#</span> -<span class="c">#You should have received a copy of the GNU General Public License</span> -<span class="c">#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.</span> -<span class="c">#</span> -<span class="c">#-----------------------------------------------------------------------</span> - -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">algorithm_c</span> <span class="k">as</span> <span class="n">a</span> - -<div class="viewcode-block" id="create"><a class="viewcode-back" href="../../algorithm.html#astra.algorithm.create">[docs]</a><span class="k">def</span> <span class="nf">create</span><span class="p">(</span><span class="n">config</span><span class="p">):</span> - <span class="sd">"""Create algorithm object.</span> -<span class="sd"> </span> -<span class="sd"> :param config: Algorithm options.</span> -<span class="sd"> :type config: :class:`dict`</span> -<span class="sd"> :returns: :class:`int` -- the ID of the constructed object.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">a</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">config</span><span class="p">)</span> -</div> -<div class="viewcode-block" id="run"><a class="viewcode-back" href="../../algorithm.html#astra.algorithm.run">[docs]</a><span class="k">def</span> <span class="nf">run</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">iterations</span><span class="o">=</span><span class="mi">1</span><span class="p">):</span> - <span class="sd">"""Run an algorithm.</span> -<span class="sd"> </span> -<span class="sd"> :param i: ID of object.</span> -<span class="sd"> :type i: :class:`int`</span> -<span class="sd"> :param iterations: Number of iterations to run.</span> -<span class="sd"> :type iterations: :class:`int`</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">a</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="n">i</span><span class="p">,</span><span class="n">iterations</span><span class="p">)</span> -</div> -<div class="viewcode-block" id="get_res_norm"><a class="viewcode-back" href="../../algorithm.html#astra.algorithm.get_res_norm">[docs]</a><span class="k">def</span> <span class="nf">get_res_norm</span><span class="p">(</span><span class="n">i</span><span class="p">):</span> - <span class="sd">"""Get residual norm of algorithm.</span> -<span class="sd"> </span> -<span class="sd"> :param i: ID of object.</span> -<span class="sd"> :type i: :class:`int`</span> -<span class="sd"> :returns: :class:`float` -- The residual norm.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - - <span class="k">return</span> <span class="n">a</span><span class="o">.</span><span class="n">get_res_norm</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> - </div> -<div class="viewcode-block" id="delete"><a class="viewcode-back" href="../../algorithm.html#astra.algorithm.delete">[docs]</a><span class="k">def</span> <span class="nf">delete</span><span class="p">(</span><span class="n">ids</span><span class="p">):</span> - <span class="sd">"""Delete a matrix object.</span> -<span class="sd"> </span> -<span class="sd"> :param ids: ID or list of ID's to delete.</span> -<span class="sd"> :type ids: :class:`int` or :class:`list`</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">a</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">ids</span><span class="p">)</span> -</div> -<div class="viewcode-block" id="clear"><a class="viewcode-back" href="../../algorithm.html#astra.algorithm.clear">[docs]</a><span class="k">def</span> <span class="nf">clear</span><span class="p">():</span> - <span class="sd">"""Clear all matrix objects."""</span> - <span class="k">return</span> <span class="n">a</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span> -</div> -<div class="viewcode-block" id="info"><a class="viewcode-back" href="../../algorithm.html#astra.algorithm.info">[docs]</a><span class="k">def</span> <span class="nf">info</span><span class="p">():</span> - <span class="sd">"""Print info on matrix objects in memory."""</span> - <span class="k">return</span> <span class="n">a</span><span class="o">.</span><span class="n">info</span><span class="p">()</span></div> -</pre></div> - - </div> - </div> - </div> - <div class="sphinxsidebar"> - <div class="sphinxsidebarwrapper"> -<div id="searchbox" style="display: none"> - <h3>Quick search</h3> - <form class="search" action="../../search.html" method="get"> - <input type="text" name="q" /> - <input type="submit" value="Go" /> - <input type="hidden" name="check_keywords" value="yes" /> - <input type="hidden" name="area" value="default" /> - </form> - <p class="searchtip" style="font-size: 90%"> - Enter search terms or a module, class or function name. - </p> -</div> -<script type="text/javascript">$('#searchbox').show(0);</script> - </div> - </div> - <div class="clearer"></div> - </div> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="../../genindex.html" title="General Index" - >index</a></li> - <li class="right" > - <a href="../../py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li><a href="../../index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - <li><a href="../index.html" >Module code</a> »</li> - </ul> - </div> - - <div class="footer"> - © Copyright 2013, Centrum Wiskunde & Informatica, Amsterdam. - Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3. - </div> -<script> - (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ - (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), - m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) - })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); - - ga('create', 'UA-40340335-1', 'dmpelt.github.io'); - ga('send', 'pageview'); - -</script> - - </body> -</html>
\ No newline at end of file diff --git a/python/docSRC/_build/html/_modules/astra/astra.html b/python/docSRC/_build/html/_modules/astra/astra.html deleted file mode 100644 index 53fac8e..0000000 --- a/python/docSRC/_build/html/_modules/astra/astra.html +++ /dev/null @@ -1,163 +0,0 @@ -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" - "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> - - -<html xmlns="http://www.w3.org/1999/xhtml"> - <head> - <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> - - <title>astra.astra — PyASTRAToolbox 1.6 documentation</title> - - <link rel="stylesheet" href="../../_static/default.css" type="text/css" /> - <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" /> - - <script type="text/javascript"> - var DOCUMENTATION_OPTIONS = { - URL_ROOT: '../../', - VERSION: '1.6', - COLLAPSE_INDEX: false, - FILE_SUFFIX: '.html', - HAS_SOURCE: true - }; - </script> - <script type="text/javascript" src="../../_static/jquery.js"></script> - <script type="text/javascript" src="../../_static/underscore.js"></script> - <script type="text/javascript" src="../../_static/doctools.js"></script> - <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script> - <link rel="top" title="PyASTRAToolbox 1.6 documentation" href="../../index.html" /> - <link rel="up" title="Module code" href="../index.html" /> - </head> - <body> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="../../genindex.html" title="General Index" - accesskey="I">index</a></li> - <li class="right" > - <a href="../../py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li><a href="../../index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - <li><a href="../index.html" accesskey="U">Module code</a> »</li> - </ul> - </div> - - <div class="document"> - <div class="documentwrapper"> - <div class="bodywrapper"> - <div class="body"> - - <h1>Source code for astra.astra</h1><div class="highlight"><pre> -<span class="c">#-----------------------------------------------------------------------</span> -<span class="c">#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam</span> -<span class="c">#</span> -<span class="c">#Author: Daniel M. Pelt</span> -<span class="c">#Contact: D.M.Pelt@cwi.nl</span> -<span class="c">#Website: http://dmpelt.github.io/pyastratoolbox/</span> -<span class="c">#</span> -<span class="c">#</span> -<span class="c">#This file is part of the Python interface to the</span> -<span class="c">#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").</span> -<span class="c">#</span> -<span class="c">#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify</span> -<span class="c">#it under the terms of the GNU General Public License as published by</span> -<span class="c">#the Free Software Foundation, either version 3 of the License, or</span> -<span class="c">#(at your option) any later version.</span> -<span class="c">#</span> -<span class="c">#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,</span> -<span class="c">#but WITHOUT ANY WARRANTY; without even the implied warranty of</span> -<span class="c">#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span> -<span class="c">#GNU General Public License for more details.</span> -<span class="c">#</span> -<span class="c">#You should have received a copy of the GNU General Public License</span> -<span class="c">#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.</span> -<span class="c">#</span> -<span class="c">#-----------------------------------------------------------------------</span> - -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">astra_c</span> <span class="k">as</span> <span class="n">a</span> - -<div class="viewcode-block" id="credits"><a class="viewcode-back" href="../../astra.html#astra.astra.credits">[docs]</a><span class="k">def</span> <span class="nf">credits</span><span class="p">():</span> - <span class="sd">"""Print credits of the ASTRA Toolbox."""</span> - <span class="k">return</span> <span class="n">a</span><span class="o">.</span><span class="n">credits</span><span class="p">()</span> - -</div> -<div class="viewcode-block" id="use_cuda"><a class="viewcode-back" href="../../astra.html#astra.astra.use_cuda">[docs]</a><span class="k">def</span> <span class="nf">use_cuda</span><span class="p">():</span> - <span class="sd">"""Test if CUDA is enabled.</span> -<span class="sd"> </span> -<span class="sd"> :returns: :class:`bool` -- ``True`` if CUDA is enabled.</span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">a</span><span class="o">.</span><span class="n">use_cuda</span><span class="p">()</span> - -</div> -<div class="viewcode-block" id="version"><a class="viewcode-back" href="../../astra.html#astra.astra.version">[docs]</a><span class="k">def</span> <span class="nf">version</span><span class="p">(</span><span class="n">printToScreen</span><span class="o">=</span><span class="bp">False</span><span class="p">):</span> - <span class="sd">"""Check version of the ASTRA Toolbox.</span> -<span class="sd"> </span> -<span class="sd"> :param printToScreen: If ``True``, print version string. If ``False``, return version integer.</span> -<span class="sd"> :type printToScreen: :class:`bool`</span> -<span class="sd"> :returns: :class:`string` or :class:`int` -- The version string or integer.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">a</span><span class="o">.</span><span class="n">version</span><span class="p">(</span><span class="n">printToScreen</span><span class="p">)</span> -</div> -<div class="viewcode-block" id="set_gpu_index"><a class="viewcode-back" href="../../astra.html#astra.astra.set_gpu_index">[docs]</a><span class="k">def</span> <span class="nf">set_gpu_index</span><span class="p">(</span><span class="n">idx</span><span class="p">):</span> - <span class="sd">"""Set default GPU index to use.</span> -<span class="sd"> </span> -<span class="sd"> :param idx: GPU index</span> -<span class="sd"> :type idx: :class:`int`</span> -<span class="sd"> """</span> - <span class="n">a</span><span class="o">.</span><span class="n">set_gpu_index</span><span class="p">(</span><span class="n">idx</span><span class="p">)</span></div> -</pre></div> - - </div> - </div> - </div> - <div class="sphinxsidebar"> - <div class="sphinxsidebarwrapper"> -<div id="searchbox" style="display: none"> - <h3>Quick search</h3> - <form class="search" action="../../search.html" method="get"> - <input type="text" name="q" /> - <input type="submit" value="Go" /> - <input type="hidden" name="check_keywords" value="yes" /> - <input type="hidden" name="area" value="default" /> - </form> - <p class="searchtip" style="font-size: 90%"> - Enter search terms or a module, class or function name. - </p> -</div> -<script type="text/javascript">$('#searchbox').show(0);</script> - </div> - </div> - <div class="clearer"></div> - </div> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="../../genindex.html" title="General Index" - >index</a></li> - <li class="right" > - <a href="../../py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li><a href="../../index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - <li><a href="../index.html" >Module code</a> »</li> - </ul> - </div> - - <div class="footer"> - © Copyright 2013, Centrum Wiskunde & Informatica, Amsterdam. - Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3. - </div> -<script> - (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ - (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), - m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) - })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); - - ga('create', 'UA-40340335-1', 'dmpelt.github.io'); - ga('send', 'pageview'); - -</script> - - </body> -</html>
\ No newline at end of file diff --git a/python/docSRC/_build/html/_modules/astra/creators.html b/python/docSRC/_build/html/_modules/astra/creators.html deleted file mode 100644 index c43978a..0000000 --- a/python/docSRC/_build/html/_modules/astra/creators.html +++ /dev/null @@ -1,668 +0,0 @@ -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" - "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> - - -<html xmlns="http://www.w3.org/1999/xhtml"> - <head> - <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> - - <title>astra.creators — PyASTRAToolbox 1.6 documentation</title> - - <link rel="stylesheet" href="../../_static/default.css" type="text/css" /> - <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" /> - - <script type="text/javascript"> - var DOCUMENTATION_OPTIONS = { - URL_ROOT: '../../', - VERSION: '1.6', - COLLAPSE_INDEX: false, - FILE_SUFFIX: '.html', - HAS_SOURCE: true - }; - </script> - <script type="text/javascript" src="../../_static/jquery.js"></script> - <script type="text/javascript" src="../../_static/underscore.js"></script> - <script type="text/javascript" src="../../_static/doctools.js"></script> - <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script> - <link rel="top" title="PyASTRAToolbox 1.6 documentation" href="../../index.html" /> - <link rel="up" title="Module code" href="../index.html" /> - </head> - <body> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="../../genindex.html" title="General Index" - accesskey="I">index</a></li> - <li class="right" > - <a href="../../py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li><a href="../../index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - <li><a href="../index.html" accesskey="U">Module code</a> »</li> - </ul> - </div> - - <div class="document"> - <div class="documentwrapper"> - <div class="bodywrapper"> - <div class="body"> - - <h1>Source code for astra.creators</h1><div class="highlight"><pre> -<span class="c">#-----------------------------------------------------------------------</span> -<span class="c">#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam</span> -<span class="c">#</span> -<span class="c">#Author: Daniel M. Pelt</span> -<span class="c">#Contact: D.M.Pelt@cwi.nl</span> -<span class="c">#Website: http://dmpelt.github.io/pyastratoolbox/</span> -<span class="c">#</span> -<span class="c">#</span> -<span class="c">#This file is part of the Python interface to the</span> -<span class="c">#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").</span> -<span class="c">#</span> -<span class="c">#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify</span> -<span class="c">#it under the terms of the GNU General Public License as published by</span> -<span class="c">#the Free Software Foundation, either version 3 of the License, or</span> -<span class="c">#(at your option) any later version.</span> -<span class="c">#</span> -<span class="c">#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,</span> -<span class="c">#but WITHOUT ANY WARRANTY; without even the implied warranty of</span> -<span class="c">#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span> -<span class="c">#GNU General Public License for more details.</span> -<span class="c">#</span> -<span class="c">#You should have received a copy of the GNU General Public License</span> -<span class="c">#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.</span> -<span class="c">#</span> -<span class="c">#-----------------------------------------------------------------------</span> - -<span class="kn">import</span> <span class="nn">six</span> -<span class="kn">import</span> <span class="nn">numpy</span> <span class="kn">as</span> <span class="nn">np</span> -<span class="kn">import</span> <span class="nn">math</span> -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">data2d</span> -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">data3d</span> -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">projector</span> -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">algorithm</span> - -<div class="viewcode-block" id="astra_dict"><a class="viewcode-back" href="../../creators.html#astra.creators.astra_dict">[docs]</a><span class="k">def</span> <span class="nf">astra_dict</span><span class="p">(</span><span class="n">intype</span><span class="p">):</span> - <span class="sd">"""Creates a dict to use with the ASTRA Toolbox.</span> -<span class="sd"> </span> -<span class="sd"> :param intype: Type of the ASTRA object.</span> -<span class="sd"> :type intype: :class:`string`</span> -<span class="sd"> :returns: :class:`dict` -- An ASTRA dict of type ``intype``.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">if</span> <span class="n">intype</span> <span class="o">==</span> <span class="s">'SIRT_CUDA2'</span><span class="p">:</span> - <span class="n">intype</span> <span class="o">=</span> <span class="s">'SIRT_CUDA'</span> - <span class="n">six</span><span class="o">.</span><span class="n">print_</span><span class="p">(</span><span class="s">'SIRT_CUDA2 has been deprecated. Use SIRT_CUDA instead.'</span><span class="p">)</span> - <span class="k">elif</span> <span class="n">intype</span> <span class="o">==</span> <span class="s">'FP_CUDA2'</span><span class="p">:</span> - <span class="n">intype</span> <span class="o">=</span> <span class="s">'FP_CUDA'</span> - <span class="n">six</span><span class="o">.</span><span class="n">print_</span><span class="p">(</span><span class="s">'FP_CUDA2 has been deprecated. Use FP_CUDA instead.'</span><span class="p">)</span> - <span class="k">return</span> <span class="p">{</span><span class="s">'type'</span><span class="p">:</span> <span class="n">intype</span><span class="p">}</span> -</div> -<div class="viewcode-block" id="create_vol_geom"><a class="viewcode-back" href="../../creators.html#astra.creators.create_vol_geom">[docs]</a><span class="k">def</span> <span class="nf">create_vol_geom</span><span class="p">(</span><span class="o">*</span><span class="n">varargin</span><span class="p">):</span> - <span class="sd">"""Create a volume geometry structure.</span> - -<span class="sd">This method can be called in a number of ways:</span> - -<span class="sd">``create_vol_geom(N)``:</span> -<span class="sd"> :returns: A 2D volume geometry of size :math:`N \\times N`.</span> - -<span class="sd">``create_vol_geom((M, N))``:</span> -<span class="sd"> :returns: A 2D volume geometry of size :math:`M \\times N`.</span> - -<span class="sd">``create_vol_geom(M, N)``:</span> -<span class="sd"> :returns: A 2D volume geometry of size :math:`M \\times N`.</span> - -<span class="sd">``create_vol_geom(M, N, minx, maxx, miny, maxy)``:</span> -<span class="sd"> :returns: A 2D volume geometry of size :math:`M \\times N`, windowed as :math:`minx \\leq x \\leq maxx` and :math:`miny \\leq y \\leq maxy`.</span> - -<span class="sd">``create_vol_geom((M, N, Z))``:</span> -<span class="sd"> :returns: A 3D volume geometry of size :math:`M \\times N \\times Z`.</span> - -<span class="sd">``create_vol_geom(M, N, Z)``:</span> -<span class="sd"> :returns: A 3D volume geometry of size :math:`M \\times N \\times Z`.</span> - -<span class="sd">"""</span> - <span class="n">vol_geom</span> <span class="o">=</span> <span class="p">{</span><span class="s">'option'</span><span class="p">:</span> <span class="p">{}}</span> - <span class="c"># astra_create_vol_geom(row_count)</span> - <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">varargin</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="nb">int</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'GridRowCount'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'GridColCount'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMinX'</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMaxX'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMinY'</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMaxY'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span> - <span class="c"># astra_create_vol_geom([row_count col_count])</span> - <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">varargin</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'GridRowCount'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'GridColCount'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMinX'</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMaxX'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMinY'</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMaxY'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span> - <span class="c"># astra_create_vol_geom([row_count col_count slice_count])</span> - <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">varargin</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">==</span> <span class="mi">3</span><span class="p">:</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'GridRowCount'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'GridColCount'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'GridSliceCount'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">2</span><span class="p">]</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMinX'</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMaxX'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMinY'</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMaxY'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMinZ'</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">2</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMaxZ'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">2</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span> - <span class="c"># astra_create_vol_geom(row_count, col_count)</span> - <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">varargin</span><span class="p">)</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'GridRowCount'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'GridColCount'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMinX'</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">varargin</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMaxX'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMinY'</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMaxY'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">/</span> <span class="mf">2.</span> - <span class="c"># astra_create_vol_geom(row_count, col_count, min_x, max_x, min_y, max_y)</span> - <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">varargin</span><span class="p">)</span> <span class="o">==</span> <span class="mi">6</span><span class="p">:</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'GridRowCount'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'GridColCount'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMinX'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMaxX'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMinY'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">4</span><span class="p">]</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMaxY'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">5</span><span class="p">]</span> - <span class="c"># astra_create_vol_geom(row_count, col_count, slice_count)</span> - <span class="k">elif</span> <span class="nb">len</span><span class="p">(</span><span class="n">varargin</span><span class="p">)</span> <span class="o">==</span> <span class="mi">3</span><span class="p">:</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'GridRowCount'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'GridColCount'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> - <span class="n">vol_geom</span><span class="p">[</span><span class="s">'GridSliceCount'</span><span class="p">]</span> <span class="o">=</span> <span class="n">varargin</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> - <span class="k">return</span> <span class="n">vol_geom</span> - -</div> -<div class="viewcode-block" id="create_proj_geom"><a class="viewcode-back" href="../../creators.html#astra.creators.create_proj_geom">[docs]</a><span class="k">def</span> <span class="nf">create_proj_geom</span><span class="p">(</span><span class="n">intype</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">):</span> - <span class="sd">"""Create a projection geometry.</span> - -<span class="sd">This method can be called in a number of ways:</span> - -<span class="sd">``create_proj_geom('parallel', detector_spacing, det_count, angles)``:</span> - -<span class="sd">:param detector_spacing: Distance between two adjacent detector pixels.</span> -<span class="sd">:type detector_spacing: :class:`float`</span> -<span class="sd">:param det_count: Number of detector pixels.</span> -<span class="sd">:type det_count: :class:`int`</span> -<span class="sd">:param angles: Array of angles in radians.</span> -<span class="sd">:type angles: :class:`numpy.ndarray`</span> -<span class="sd">:returns: A parallel projection geometry.</span> - - -<span class="sd">``create_proj_geom('fanflat', det_width, det_count, angles, source_origin, source_det)``:</span> - -<span class="sd">:param det_width: Size of a detector pixel.</span> -<span class="sd">:type det_width: :class:`float`</span> -<span class="sd">:param det_count: Number of detector pixels.</span> -<span class="sd">:type det_count: :class:`int`</span> -<span class="sd">:param angles: Array of angles in radians.</span> -<span class="sd">:type angles: :class:`numpy.ndarray`</span> -<span class="sd">:param source_origin: Position of the source.</span> -<span class="sd">:param source_det: Position of the detector</span> -<span class="sd">:returns: A fan-beam projection geometry.</span> - -<span class="sd">``create_proj_geom('fanflat_vec', det_count, V)``:</span> - -<span class="sd">:param det_count: Number of detector pixels.</span> -<span class="sd">:type det_count: :class:`int`</span> -<span class="sd">:param V: Vector array.</span> -<span class="sd">:type V: :class:`numpy.ndarray`</span> -<span class="sd">:returns: A fan-beam projection geometry.</span> - -<span class="sd">``create_proj_geom('parallel3d', detector_spacing_x, detector_spacing_y, det_row_count, det_col_count, angles)``:</span> - -<span class="sd">:param detector_spacing_*: Distance between two adjacent detector pixels.</span> -<span class="sd">:type detector_spacing_*: :class:`float`</span> -<span class="sd">:param det_row_count: Number of detector pixel rows.</span> -<span class="sd">:type det_row_count: :class:`int`</span> -<span class="sd">:param det_col_count: Number of detector pixel columns.</span> -<span class="sd">:type det_col_count: :class:`int`</span> -<span class="sd">:param angles: Array of angles in radians.</span> -<span class="sd">:type angles: :class:`numpy.ndarray`</span> -<span class="sd">:returns: A parallel projection geometry.</span> - -<span class="sd">``create_proj_geom('cone', detector_spacing_x, detector_spacing_y, det_row_count, det_col_count, angles, source_origin, source_det)``:</span> - -<span class="sd">:param detector_spacing_*: Distance between two adjacent detector pixels.</span> -<span class="sd">:type detector_spacing_*: :class:`float`</span> -<span class="sd">:param det_row_count: Number of detector pixel rows.</span> -<span class="sd">:type det_row_count: :class:`int`</span> -<span class="sd">:param det_col_count: Number of detector pixel columns.</span> -<span class="sd">:type det_col_count: :class:`int`</span> -<span class="sd">:param angles: Array of angles in radians.</span> -<span class="sd">:type angles: :class:`numpy.ndarray`</span> -<span class="sd">:param source_origin: Distance between point source and origin.</span> -<span class="sd">:type source_origin: :class:`float`</span> -<span class="sd">:param source_det: Distance between the detector and origin.</span> -<span class="sd">:type source_det: :class:`float`</span> -<span class="sd">:returns: A cone-beam projection geometry.</span> - -<span class="sd">``create_proj_geom('cone_vec', det_row_count, det_col_count, V)``:</span> - -<span class="sd">:param det_row_count: Number of detector pixel rows.</span> -<span class="sd">:type det_row_count: :class:`int`</span> -<span class="sd">:param det_col_count: Number of detector pixel columns.</span> -<span class="sd">:type det_col_count: :class:`int`</span> -<span class="sd">:param V: Vector array.</span> -<span class="sd">:type V: :class:`numpy.ndarray`</span> -<span class="sd">:returns: A cone-beam projection geometry.</span> - -<span class="sd">``create_proj_geom('parallel3d_vec', det_row_count, det_col_count, V)``:</span> - -<span class="sd">:param det_row_count: Number of detector pixel rows.</span> -<span class="sd">:type det_row_count: :class:`int`</span> -<span class="sd">:param det_col_count: Number of detector pixel columns.</span> -<span class="sd">:type det_col_count: :class:`int`</span> -<span class="sd">:param V: Vector array.</span> -<span class="sd">:type V: :class:`numpy.ndarray`</span> -<span class="sd">:returns: A parallel projection geometry.</span> - -<span class="sd">``create_proj_geom('sparse_matrix', det_width, det_count, angles, matrix_id)``:</span> - -<span class="sd">:param det_width: Size of a detector pixel.</span> -<span class="sd">:type det_width: :class:`float`</span> -<span class="sd">:param det_count: Number of detector pixels.</span> -<span class="sd">:type det_count: :class:`int`</span> -<span class="sd">:param angles: Array of angles in radians.</span> -<span class="sd">:type angles: :class:`numpy.ndarray`</span> -<span class="sd">:param matrix_id: ID of the sparse matrix.</span> -<span class="sd">:type matrix_id: :class:`int`</span> -<span class="sd">:returns: A projection geometry based on a sparse matrix.</span> - -<span class="sd">"""</span> - <span class="k">if</span> <span class="n">intype</span> <span class="o">==</span> <span class="s">'parallel'</span><span class="p">:</span> - <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">args</span><span class="p">)</span> <span class="o"><</span> <span class="mi">3</span><span class="p">:</span> - <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span> - <span class="s">'not enough variables: astra_create_proj_geom(parallel, detector_spacing, det_count, angles)'</span><span class="p">)</span> - <span class="k">return</span> <span class="p">{</span><span class="s">'type'</span><span class="p">:</span> <span class="s">'parallel'</span><span class="p">,</span> <span class="s">'DetectorWidth'</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="s">'DetectorCount'</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="s">'ProjectionAngles'</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">2</span><span class="p">]}</span> - <span class="k">elif</span> <span class="n">intype</span> <span class="o">==</span> <span class="s">'fanflat'</span><span class="p">:</span> - <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">args</span><span class="p">)</span> <span class="o"><</span> <span class="mi">5</span><span class="p">:</span> - <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">'not enough variables: astra_create_proj_geom(fanflat, det_width, det_count, angles, source_origin, source_det)'</span><span class="p">)</span> - <span class="k">return</span> <span class="p">{</span><span class="s">'type'</span><span class="p">:</span> <span class="s">'fanflat'</span><span class="p">,</span> <span class="s">'DetectorWidth'</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="s">'DetectorCount'</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="s">'ProjectionAngles'</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">2</span><span class="p">],</span> <span class="s">'DistanceOriginSource'</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">3</span><span class="p">],</span> <span class="s">'DistanceOriginDetector'</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">4</span><span class="p">]}</span> - <span class="k">elif</span> <span class="n">intype</span> <span class="o">==</span> <span class="s">'fanflat_vec'</span><span class="p">:</span> - <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">args</span><span class="p">)</span> <span class="o"><</span> <span class="mi">2</span><span class="p">:</span> - <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">'not enough variables: astra_create_proj_geom(fanflat_vec, det_count, V)'</span><span class="p">)</span> - <span class="k">if</span> <span class="ow">not</span> <span class="n">args</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="mi">6</span><span class="p">:</span> - <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">'V should be a Nx6 matrix, with N the number of projections'</span><span class="p">)</span> - <span class="k">return</span> <span class="p">{</span><span class="s">'type'</span><span class="p">:</span><span class="s">'fanflat_vec'</span><span class="p">,</span> <span class="s">'DetectorCount'</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="s">'Vectors'</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">1</span><span class="p">]}</span> - <span class="k">elif</span> <span class="n">intype</span> <span class="o">==</span> <span class="s">'parallel3d'</span><span class="p">:</span> - <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">args</span><span class="p">)</span> <span class="o"><</span> <span class="mi">5</span><span class="p">:</span> - <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">'not enough variables: astra_create_proj_geom(parallel3d, detector_spacing_x, detector_spacing_y, det_row_count, det_col_count, angles)'</span><span class="p">)</span> - <span class="k">return</span> <span class="p">{</span><span class="s">'type'</span><span class="p">:</span><span class="s">'parallel3d'</span><span class="p">,</span> <span class="s">'DetectorSpacingX'</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="s">'DetectorSpacingY'</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="s">'DetectorRowCount'</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">2</span><span class="p">],</span> <span class="s">'DetectorColCount'</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">3</span><span class="p">],</span><span class="s">'ProjectionAngles'</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">4</span><span class="p">]}</span> - <span class="k">elif</span> <span class="n">intype</span> <span class="o">==</span> <span class="s">'cone'</span><span class="p">:</span> - <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">args</span><span class="p">)</span> <span class="o"><</span> <span class="mi">7</span><span class="p">:</span> - <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">'not enough variables: astra_create_proj_geom(cone, detector_spacing_x, detector_spacing_y, det_row_count, det_col_count, angles, source_origin, source_det)'</span><span class="p">)</span> - <span class="k">return</span> <span class="p">{</span><span class="s">'type'</span><span class="p">:</span> <span class="s">'cone'</span><span class="p">,</span><span class="s">'DetectorSpacingX'</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="s">'DetectorSpacingY'</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="s">'DetectorRowCount'</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">2</span><span class="p">],</span><span class="s">'DetectorColCount'</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">3</span><span class="p">],</span><span class="s">'ProjectionAngles'</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">4</span><span class="p">],</span><span class="s">'DistanceOriginSource'</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">5</span><span class="p">],</span><span class="s">'DistanceOriginDetector'</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">6</span><span class="p">]}</span> - <span class="k">elif</span> <span class="n">intype</span> <span class="o">==</span> <span class="s">'cone_vec'</span><span class="p">:</span> - <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">args</span><span class="p">)</span> <span class="o"><</span> <span class="mi">3</span><span class="p">:</span> - <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">'not enough variables: astra_create_proj_geom(cone_vec, det_row_count, det_col_count, V)'</span><span class="p">)</span> - <span class="k">if</span> <span class="ow">not</span> <span class="n">args</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="mi">12</span><span class="p">:</span> - <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">'V should be a Nx12 matrix, with N the number of projections'</span><span class="p">)</span> - <span class="k">return</span> <span class="p">{</span><span class="s">'type'</span><span class="p">:</span> <span class="s">'cone_vec'</span><span class="p">,</span><span class="s">'DetectorRowCount'</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span><span class="s">'DetectorColCount'</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span><span class="s">'Vectors'</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">2</span><span class="p">]}</span> - <span class="k">elif</span> <span class="n">intype</span> <span class="o">==</span> <span class="s">'parallel3d_vec'</span><span class="p">:</span> - <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">args</span><span class="p">)</span> <span class="o"><</span> <span class="mi">3</span><span class="p">:</span> - <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">'not enough variables: astra_create_proj_geom(parallel3d_vec, det_row_count, det_col_count, V)'</span><span class="p">)</span> - <span class="k">if</span> <span class="ow">not</span> <span class="n">args</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">==</span> <span class="mi">12</span><span class="p">:</span> - <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">'V should be a Nx12 matrix, with N the number of projections'</span><span class="p">)</span> - <span class="k">return</span> <span class="p">{</span><span class="s">'type'</span><span class="p">:</span> <span class="s">'parallel3d_vec'</span><span class="p">,</span><span class="s">'DetectorRowCount'</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span><span class="s">'DetectorColCount'</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span><span class="s">'Vectors'</span><span class="p">:</span><span class="n">args</span><span class="p">[</span><span class="mi">2</span><span class="p">]}</span> - <span class="k">elif</span> <span class="n">intype</span> <span class="o">==</span> <span class="s">'sparse_matrix'</span><span class="p">:</span> - <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">args</span><span class="p">)</span> <span class="o"><</span> <span class="mi">4</span><span class="p">:</span> - <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span> - <span class="s">'not enough variables: astra_create_proj_geom(sparse_matrix, det_width, det_count, angles, matrix_id)'</span><span class="p">)</span> - <span class="k">return</span> <span class="p">{</span><span class="s">'type'</span><span class="p">:</span> <span class="s">'sparse_matrix'</span><span class="p">,</span> <span class="s">'DetectorWidth'</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="s">'DetectorCount'</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">1</span><span class="p">],</span> <span class="s">'ProjectionAngles'</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">2</span><span class="p">],</span> <span class="s">'MatrixID'</span><span class="p">:</span> <span class="n">args</span><span class="p">[</span><span class="mi">3</span><span class="p">]}</span> - <span class="k">else</span><span class="p">:</span> - <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">'Error: unknown type '</span> <span class="o">+</span> <span class="n">intype</span><span class="p">)</span> - -</div> -<div class="viewcode-block" id="create_backprojection"><a class="viewcode-back" href="../../creators.html#astra.creators.create_backprojection">[docs]</a><span class="k">def</span> <span class="nf">create_backprojection</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">proj_id</span><span class="p">,</span> <span class="n">useCUDA</span><span class="o">=</span><span class="bp">False</span><span class="p">,</span> <span class="n">returnData</span><span class="o">=</span><span class="bp">True</span><span class="p">):</span> - <span class="sd">"""Create a backprojection of a sinogram (2D).</span> - -<span class="sd">:param data: Sinogram data or ID.</span> -<span class="sd">:type data: :class:`numpy.ndarray` or :class:`int`</span> -<span class="sd">:param proj_id: ID of the projector to use.</span> -<span class="sd">:type proj_id: :class:`int`</span> -<span class="sd">:param useCUDA: If ``True``, use CUDA for the calculation.</span> -<span class="sd">:type useCUDA: :class:`bool`</span> -<span class="sd">:param returnData: If False, only return the ID of the backprojection.</span> -<span class="sd">:type returnData: :class:`bool`</span> -<span class="sd">:returns: :class:`int` or (:class:`int`, :class:`numpy.ndarray`) -- If ``returnData=False``, returns the ID of the backprojection. Otherwise, returns a tuple containing the ID of the backprojection and the backprojection itself, in that order.</span> - -<span class="sd">"""</span> - <span class="n">proj_geom</span> <span class="o">=</span> <span class="n">projector</span><span class="o">.</span><span class="n">projection_geometry</span><span class="p">(</span><span class="n">proj_id</span><span class="p">)</span> - <span class="n">vol_geom</span> <span class="o">=</span> <span class="n">projector</span><span class="o">.</span><span class="n">volume_geometry</span><span class="p">(</span><span class="n">proj_id</span><span class="p">)</span> - <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span> - <span class="n">sino_id</span> <span class="o">=</span> <span class="n">data2d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">'-sino'</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">,</span> <span class="n">data</span><span class="p">)</span> - <span class="k">else</span><span class="p">:</span> - <span class="n">sino_id</span> <span class="o">=</span> <span class="n">data</span> - <span class="n">vol_id</span> <span class="o">=</span> <span class="n">data2d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">'-vol'</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> - - <span class="n">algString</span> <span class="o">=</span> <span class="s">'BP'</span> - <span class="k">if</span> <span class="n">useCUDA</span><span class="p">:</span> - <span class="n">algString</span> <span class="o">=</span> <span class="n">algString</span> <span class="o">+</span> <span class="s">'_CUDA'</span> - - <span class="n">cfg</span> <span class="o">=</span> <span class="n">astra_dict</span><span class="p">(</span><span class="n">algString</span><span class="p">)</span> - <span class="k">if</span> <span class="ow">not</span> <span class="n">useCUDA</span><span class="p">:</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'ProjectorId'</span><span class="p">]</span> <span class="o">=</span> <span class="n">proj_id</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'ProjectionDataId'</span><span class="p">]</span> <span class="o">=</span> <span class="n">sino_id</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'ReconstructionDataId'</span><span class="p">]</span> <span class="o">=</span> <span class="n">vol_id</span> - <span class="n">alg_id</span> <span class="o">=</span> <span class="n">algorithm</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">cfg</span><span class="p">)</span> - <span class="n">algorithm</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span> - <span class="n">algorithm</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span> - - <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span> - <span class="n">data2d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">sino_id</span><span class="p">)</span> - - <span class="k">if</span> <span class="n">returnData</span><span class="p">:</span> - <span class="k">return</span> <span class="n">vol_id</span><span class="p">,</span> <span class="n">data2d</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">vol_id</span><span class="p">)</span> - <span class="k">else</span><span class="p">:</span> - <span class="k">return</span> <span class="n">vol_id</span> -</div> -<div class="viewcode-block" id="create_backprojection3d_gpu"><a class="viewcode-back" href="../../creators.html#astra.creators.create_backprojection3d_gpu">[docs]</a><span class="k">def</span> <span class="nf">create_backprojection3d_gpu</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">,</span> <span class="n">returnData</span><span class="o">=</span><span class="bp">True</span><span class="p">):</span> - <span class="sd">"""Create a backprojection of a sinogram (3D) using CUDA.</span> - -<span class="sd">:param data: Sinogram data or ID.</span> -<span class="sd">:type data: :class:`numpy.ndarray` or :class:`int`</span> -<span class="sd">:param proj_geom: Projection geometry.</span> -<span class="sd">:type proj_geom: :class:`dict`</span> -<span class="sd">:param vol_geom: Volume geometry.</span> -<span class="sd">:type vol_geom: :class:`dict`</span> -<span class="sd">:param returnData: If False, only return the ID of the backprojection.</span> -<span class="sd">:type returnData: :class:`bool`</span> -<span class="sd">:returns: :class:`int` or (:class:`int`, :class:`numpy.ndarray`) -- If ``returnData=False``, returns the ID of the backprojection. Otherwise, returns a tuple containing the ID of the backprojection and the backprojection itself, in that order.</span> - -<span class="sd">"""</span> - <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span> - <span class="n">sino_id</span> <span class="o">=</span> <span class="n">data3d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">'-sino'</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">,</span> <span class="n">data</span><span class="p">)</span> - <span class="k">else</span><span class="p">:</span> - <span class="n">sino_id</span> <span class="o">=</span> <span class="n">data</span> - - <span class="n">vol_id</span> <span class="o">=</span> <span class="n">data3d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">'-vol'</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> - - <span class="n">cfg</span> <span class="o">=</span> <span class="n">astra_dict</span><span class="p">(</span><span class="s">'BP3D_CUDA'</span><span class="p">)</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'ProjectionDataId'</span><span class="p">]</span> <span class="o">=</span> <span class="n">sino_id</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'ReconstructionDataId'</span><span class="p">]</span> <span class="o">=</span> <span class="n">vol_id</span> - <span class="n">alg_id</span> <span class="o">=</span> <span class="n">algorithm</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">cfg</span><span class="p">)</span> - <span class="n">algorithm</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span> - <span class="n">algorithm</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span> - - <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span> - <span class="n">data3d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">sino_id</span><span class="p">)</span> - - <span class="k">if</span> <span class="n">returnData</span><span class="p">:</span> - <span class="k">return</span> <span class="n">vol_id</span><span class="p">,</span> <span class="n">data3d</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">vol_id</span><span class="p">)</span> - <span class="k">else</span><span class="p">:</span> - <span class="k">return</span> <span class="n">vol_id</span> - -</div> -<div class="viewcode-block" id="create_sino"><a class="viewcode-back" href="../../creators.html#astra.creators.create_sino">[docs]</a><span class="k">def</span> <span class="nf">create_sino</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">proj_id</span><span class="o">=</span><span class="bp">None</span><span class="p">,</span> <span class="n">proj_geom</span><span class="o">=</span><span class="bp">None</span><span class="p">,</span> <span class="n">vol_geom</span><span class="o">=</span><span class="bp">None</span><span class="p">,</span> - <span class="n">useCUDA</span><span class="o">=</span><span class="bp">False</span><span class="p">,</span> <span class="n">returnData</span><span class="o">=</span><span class="bp">True</span><span class="p">,</span> <span class="n">gpuIndex</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span> - <span class="sd">"""Create a forward projection of an image (2D).</span> - -<span class="sd"> :param data: Image data or ID.</span> -<span class="sd"> :type data: :class:`numpy.ndarray` or :class:`int`</span> -<span class="sd"> :param proj_id: ID of the projector to use.</span> -<span class="sd"> :type proj_id: :class:`int`</span> -<span class="sd"> :param proj_geom: Projection geometry.</span> -<span class="sd"> :type proj_geom: :class:`dict`</span> -<span class="sd"> :param vol_geom: Volume geometry.</span> -<span class="sd"> :type vol_geom: :class:`dict`</span> -<span class="sd"> :param useCUDA: If ``True``, use CUDA for the calculation.</span> -<span class="sd"> :type useCUDA: :class:`bool`</span> -<span class="sd"> :param returnData: If False, only return the ID of the forward projection.</span> -<span class="sd"> :type returnData: :class:`bool`</span> -<span class="sd"> :param gpuIndex: Optional GPU index.</span> -<span class="sd"> :type gpuIndex: :class:`int`</span> -<span class="sd"> :returns: :class:`int` or (:class:`int`, :class:`numpy.ndarray`)</span> - -<span class="sd"> If ``returnData=False``, returns the ID of the forward</span> -<span class="sd"> projection. Otherwise, returns a tuple containing the ID of the</span> -<span class="sd"> forward projection and the forward projection itself, in that</span> -<span class="sd"> order.</span> - -<span class="sd"> The geometry of setup is defined by ``proj_id`` or with</span> -<span class="sd"> ``proj_geom`` and ``vol_geom``. If ``proj_id`` is given, then</span> -<span class="sd"> ``proj_geom`` and ``vol_geom`` must be None and vice versa.</span> -<span class="sd">"""</span> - <span class="k">if</span> <span class="n">proj_id</span> <span class="ow">is</span> <span class="ow">not</span> <span class="bp">None</span><span class="p">:</span> - <span class="n">proj_geom</span> <span class="o">=</span> <span class="n">projector</span><span class="o">.</span><span class="n">projection_geometry</span><span class="p">(</span><span class="n">proj_id</span><span class="p">)</span> - <span class="n">vol_geom</span> <span class="o">=</span> <span class="n">projector</span><span class="o">.</span><span class="n">volume_geometry</span><span class="p">(</span><span class="n">proj_id</span><span class="p">)</span> - <span class="k">elif</span> <span class="n">proj_geom</span> <span class="ow">is</span> <span class="ow">not</span> <span class="bp">None</span> <span class="ow">and</span> <span class="n">vol_geom</span> <span class="ow">is</span> <span class="ow">not</span> <span class="bp">None</span><span class="p">:</span> - <span class="k">if</span> <span class="ow">not</span> <span class="n">useCUDA</span><span class="p">:</span> - <span class="c"># We need more parameters to create projector.</span> - <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span> - <span class="sd">"""A ``proj_id`` is needed when CUDA is not used."""</span><span class="p">)</span> - <span class="k">else</span><span class="p">:</span> - <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">"""The geometry setup is not defined.</span> -<span class="s"> The geometry of setup is defined by ``proj_id`` or with</span> -<span class="s"> ``proj_geom`` and ``vol_geom``. If ``proj_id`` is given, then</span> -<span class="s"> ``proj_geom`` and ``vol_geom`` must be None and vice versa."""</span><span class="p">)</span> - - <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span> - <span class="n">volume_id</span> <span class="o">=</span> <span class="n">data2d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">'-vol'</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">,</span> <span class="n">data</span><span class="p">)</span> - <span class="k">else</span><span class="p">:</span> - <span class="n">volume_id</span> <span class="o">=</span> <span class="n">data</span> - <span class="n">sino_id</span> <span class="o">=</span> <span class="n">data2d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">'-sino'</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> - <span class="n">algString</span> <span class="o">=</span> <span class="s">'FP'</span> - <span class="k">if</span> <span class="n">useCUDA</span><span class="p">:</span> - <span class="n">algString</span> <span class="o">=</span> <span class="n">algString</span> <span class="o">+</span> <span class="s">'_CUDA'</span> - <span class="n">cfg</span> <span class="o">=</span> <span class="n">astra_dict</span><span class="p">(</span><span class="n">algString</span><span class="p">)</span> - <span class="k">if</span> <span class="ow">not</span> <span class="n">useCUDA</span><span class="p">:</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'ProjectorId'</span><span class="p">]</span> <span class="o">=</span> <span class="n">proj_id</span> - <span class="k">if</span> <span class="n">gpuIndex</span> <span class="ow">is</span> <span class="ow">not</span> <span class="bp">None</span><span class="p">:</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'option'</span><span class="p">]</span> <span class="o">=</span> <span class="p">{</span><span class="s">'GPUindex'</span><span class="p">:</span> <span class="n">gpuIndex</span><span class="p">}</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'ProjectionDataId'</span><span class="p">]</span> <span class="o">=</span> <span class="n">sino_id</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'VolumeDataId'</span><span class="p">]</span> <span class="o">=</span> <span class="n">volume_id</span> - <span class="n">alg_id</span> <span class="o">=</span> <span class="n">algorithm</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">cfg</span><span class="p">)</span> - <span class="n">algorithm</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span> - <span class="n">algorithm</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span> - - <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span> - <span class="n">data2d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">volume_id</span><span class="p">)</span> - <span class="k">if</span> <span class="n">returnData</span><span class="p">:</span> - <span class="k">return</span> <span class="n">sino_id</span><span class="p">,</span> <span class="n">data2d</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">sino_id</span><span class="p">)</span> - <span class="k">else</span><span class="p">:</span> - <span class="k">return</span> <span class="n">sino_id</span> - - -</div> -<div class="viewcode-block" id="create_sino3d_gpu"><a class="viewcode-back" href="../../creators.html#astra.creators.create_sino3d_gpu">[docs]</a><span class="k">def</span> <span class="nf">create_sino3d_gpu</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">,</span> <span class="n">returnData</span><span class="o">=</span><span class="bp">True</span><span class="p">,</span> <span class="n">gpuIndex</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span> - <span class="sd">"""Create a forward projection of an image (3D).</span> - -<span class="sd">:param data: Image data or ID.</span> -<span class="sd">:type data: :class:`numpy.ndarray` or :class:`int`</span> -<span class="sd">:param proj_geom: Projection geometry.</span> -<span class="sd">:type proj_geom: :class:`dict`</span> -<span class="sd">:param vol_geom: Volume geometry.</span> -<span class="sd">:type vol_geom: :class:`dict`</span> -<span class="sd">:param returnData: If False, only return the ID of the forward projection.</span> -<span class="sd">:type returnData: :class:`bool`</span> -<span class="sd">:param gpuIndex: Optional GPU index.</span> -<span class="sd">:type gpuIndex: :class:`int`</span> -<span class="sd">:returns: :class:`int` or (:class:`int`, :class:`numpy.ndarray`) -- If ``returnData=False``, returns the ID of the forward projection. Otherwise, returns a tuple containing the ID of the forward projection and the forward projection itself, in that order.</span> - -<span class="sd">"""</span> - - <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span> - <span class="n">volume_id</span> <span class="o">=</span> <span class="n">data3d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">'-vol'</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">,</span> <span class="n">data</span><span class="p">)</span> - <span class="k">else</span><span class="p">:</span> - <span class="n">volume_id</span> <span class="o">=</span> <span class="n">data</span> - <span class="n">sino_id</span> <span class="o">=</span> <span class="n">data3d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">'-sino'</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> - <span class="n">algString</span> <span class="o">=</span> <span class="s">'FP3D_CUDA'</span> - <span class="n">cfg</span> <span class="o">=</span> <span class="n">astra_dict</span><span class="p">(</span><span class="n">algString</span><span class="p">)</span> - <span class="k">if</span> <span class="ow">not</span> <span class="n">gpuIndex</span><span class="o">==</span><span class="bp">None</span><span class="p">:</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'option'</span><span class="p">]</span><span class="o">=</span><span class="p">{</span><span class="s">'GPUindex'</span><span class="p">:</span><span class="n">gpuIndex</span><span class="p">}</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'ProjectionDataId'</span><span class="p">]</span> <span class="o">=</span> <span class="n">sino_id</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'VolumeDataId'</span><span class="p">]</span> <span class="o">=</span> <span class="n">volume_id</span> - <span class="n">alg_id</span> <span class="o">=</span> <span class="n">algorithm</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">cfg</span><span class="p">)</span> - <span class="n">algorithm</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span> - <span class="n">algorithm</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span> - - <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span> - <span class="n">data3d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">volume_id</span><span class="p">)</span> - <span class="k">if</span> <span class="n">returnData</span><span class="p">:</span> - <span class="k">return</span> <span class="n">sino_id</span><span class="p">,</span> <span class="n">data3d</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">sino_id</span><span class="p">)</span> - <span class="k">else</span><span class="p">:</span> - <span class="k">return</span> <span class="n">sino_id</span> - -</div> -<div class="viewcode-block" id="create_reconstruction"><a class="viewcode-back" href="../../creators.html#astra.creators.create_reconstruction">[docs]</a><span class="k">def</span> <span class="nf">create_reconstruction</span><span class="p">(</span><span class="n">rec_type</span><span class="p">,</span> <span class="n">proj_id</span><span class="p">,</span> <span class="n">sinogram</span><span class="p">,</span> <span class="n">iterations</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">use_mask</span><span class="o">=</span><span class="s">'no'</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">([]),</span> <span class="n">use_minc</span><span class="o">=</span><span class="s">'no'</span><span class="p">,</span> <span class="n">minc</span><span class="o">=</span><span class="mi">0</span><span class="p">,</span> <span class="n">use_maxc</span><span class="o">=</span><span class="s">'no'</span><span class="p">,</span> <span class="n">maxc</span><span class="o">=</span><span class="mi">255</span><span class="p">,</span> <span class="n">returnData</span><span class="o">=</span><span class="bp">True</span><span class="p">,</span> <span class="n">filterType</span><span class="o">=</span><span class="bp">None</span><span class="p">,</span> <span class="n">filterData</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span> - <span class="sd">"""Create a reconstruction of a sinogram (2D).</span> - -<span class="sd">:param rec_type: Name of the reconstruction algorithm.</span> -<span class="sd">:type rec_type: :class:`string`</span> -<span class="sd">:param proj_id: ID of the projector to use.</span> -<span class="sd">:type proj_id: :class:`int`</span> -<span class="sd">:param sinogram: Sinogram data or ID.</span> -<span class="sd">:type sinogram: :class:`numpy.ndarray` or :class:`int`</span> -<span class="sd">:param iterations: Number of iterations to run.</span> -<span class="sd">:type iterations: :class:`int`</span> -<span class="sd">:param use_mask: Whether to use a mask.</span> -<span class="sd">:type use_mask: ``'yes'`` or ``'no'``</span> -<span class="sd">:param mask: Mask data or ID</span> -<span class="sd">:type mask: :class:`numpy.ndarray` or :class:`int`</span> -<span class="sd">:param use_minc: Whether to force a minimum value on the reconstruction pixels.</span> -<span class="sd">:type use_minc: ``'yes'`` or ``'no'``</span> -<span class="sd">:param minc: Minimum value to use.</span> -<span class="sd">:type minc: :class:`float`</span> -<span class="sd">:param use_maxc: Whether to force a maximum value on the reconstruction pixels.</span> -<span class="sd">:type use_maxc: ``'yes'`` or ``'no'``</span> -<span class="sd">:param maxc: Maximum value to use.</span> -<span class="sd">:type maxc: :class:`float`</span> -<span class="sd">:param returnData: If False, only return the ID of the reconstruction.</span> -<span class="sd">:type returnData: :class:`bool`</span> -<span class="sd">:param filterType: Which type of filter to use for filter-based methods.</span> -<span class="sd">:type filterType: :class:`string`</span> -<span class="sd">:param filterData: Optional filter data for filter-based methods.</span> -<span class="sd">:type filterData: :class:`numpy.ndarray`</span> -<span class="sd">:returns: :class:`int` or (:class:`int`, :class:`numpy.ndarray`) -- If ``returnData=False``, returns the ID of the reconstruction. Otherwise, returns a tuple containing the ID of the reconstruction and reconstruction itself, in that order.</span> - -<span class="sd">"""</span> - <span class="n">proj_geom</span> <span class="o">=</span> <span class="n">projector</span><span class="o">.</span><span class="n">projection_geometry</span><span class="p">(</span><span class="n">proj_id</span><span class="p">)</span> - <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">sinogram</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span> - <span class="n">sino_id</span> <span class="o">=</span> <span class="n">data2d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">'-sino'</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">,</span> <span class="n">sinogram</span><span class="p">)</span> - <span class="k">else</span><span class="p">:</span> - <span class="n">sino_id</span> <span class="o">=</span> <span class="n">sinogram</span> - <span class="n">vol_geom</span> <span class="o">=</span> <span class="n">projector</span><span class="o">.</span><span class="n">volume_geometry</span><span class="p">(</span><span class="n">proj_id</span><span class="p">)</span> - <span class="n">recon_id</span> <span class="o">=</span> <span class="n">data2d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">'-vol'</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">,</span> <span class="mi">0</span><span class="p">)</span> - <span class="n">cfg</span> <span class="o">=</span> <span class="n">astra_dict</span><span class="p">(</span><span class="n">rec_type</span><span class="p">)</span> - <span class="k">if</span> <span class="ow">not</span> <span class="s">'CUDA'</span> <span class="ow">in</span> <span class="n">rec_type</span><span class="p">:</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'ProjectorId'</span><span class="p">]</span> <span class="o">=</span> <span class="n">proj_id</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'ProjectionDataId'</span><span class="p">]</span> <span class="o">=</span> <span class="n">sino_id</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'ReconstructionDataId'</span><span class="p">]</span> <span class="o">=</span> <span class="n">recon_id</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'options'</span><span class="p">]</span> <span class="o">=</span> <span class="p">{}</span> - <span class="k">if</span> <span class="n">use_mask</span> <span class="o">==</span> <span class="s">'yes'</span><span class="p">:</span> - <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">mask</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span> - <span class="n">mask_id</span> <span class="o">=</span> <span class="n">data2d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">'-vol'</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">,</span> <span class="n">mask</span><span class="p">)</span> - <span class="k">else</span><span class="p">:</span> - <span class="n">mask_id</span> <span class="o">=</span> <span class="n">mask</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'options'</span><span class="p">][</span><span class="s">'ReconstructionMaskId'</span><span class="p">]</span> <span class="o">=</span> <span class="n">mask_id</span> - <span class="k">if</span> <span class="ow">not</span> <span class="n">filterType</span> <span class="o">==</span> <span class="bp">None</span><span class="p">:</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'FilterType'</span><span class="p">]</span> <span class="o">=</span> <span class="n">filterType</span> - <span class="k">if</span> <span class="ow">not</span> <span class="n">filterData</span> <span class="o">==</span> <span class="bp">None</span><span class="p">:</span> - <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">filterData</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span> - <span class="n">nexpow</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span> - <span class="nb">pow</span><span class="p">(</span><span class="mi">2</span><span class="p">,</span> <span class="n">math</span><span class="o">.</span><span class="n">ceil</span><span class="p">(</span><span class="n">math</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="mi">2</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DetectorCount'</span><span class="p">],</span> <span class="mi">2</span><span class="p">))))</span> - <span class="n">filtSize</span> <span class="o">=</span> <span class="n">nexpow</span> <span class="o">/</span> <span class="mi">2</span> <span class="o">+</span> <span class="mi">1</span> - <span class="n">filt_proj_geom</span> <span class="o">=</span> <span class="n">create_proj_geom</span><span class="p">(</span> - <span class="s">'parallel'</span><span class="p">,</span> <span class="mf">1.0</span><span class="p">,</span> <span class="n">filtSize</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'ProjectionAngles'</span><span class="p">])</span> - <span class="n">filt_id</span> <span class="o">=</span> <span class="n">data2d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="s">'-sino'</span><span class="p">,</span> <span class="n">filt_proj_geom</span><span class="p">,</span> <span class="n">filterData</span><span class="p">)</span> - <span class="k">else</span><span class="p">:</span> - <span class="n">filt_id</span> <span class="o">=</span> <span class="n">filterData</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'FilterSinogramId'</span><span class="p">]</span> <span class="o">=</span> <span class="n">filt_id</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'options'</span><span class="p">][</span><span class="s">'UseMinConstraint'</span><span class="p">]</span> <span class="o">=</span> <span class="n">use_minc</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'options'</span><span class="p">][</span><span class="s">'MinConstraintValue'</span><span class="p">]</span> <span class="o">=</span> <span class="n">minc</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'options'</span><span class="p">][</span><span class="s">'UseMaxConstraint'</span><span class="p">]</span> <span class="o">=</span> <span class="n">use_maxc</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'options'</span><span class="p">][</span><span class="s">'MaxConstraintValue'</span><span class="p">]</span> <span class="o">=</span> <span class="n">maxc</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'options'</span><span class="p">][</span><span class="s">'ProjectionOrder'</span><span class="p">]</span> <span class="o">=</span> <span class="s">'random'</span> - <span class="n">alg_id</span> <span class="o">=</span> <span class="n">algorithm</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">cfg</span><span class="p">)</span> - <span class="n">algorithm</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="n">alg_id</span><span class="p">,</span> <span class="n">iterations</span><span class="p">)</span> - - <span class="n">algorithm</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span> - - <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">sinogram</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span> - <span class="n">data2d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">sino_id</span><span class="p">)</span> - <span class="k">if</span> <span class="n">use_mask</span> <span class="o">==</span> <span class="s">'yes'</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">mask</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span> - <span class="n">data2d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">mask_id</span><span class="p">)</span> - <span class="k">if</span> <span class="ow">not</span> <span class="n">filterData</span> <span class="o">==</span> <span class="bp">None</span><span class="p">:</span> - <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">filterData</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span> - <span class="n">data2d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">filt_id</span><span class="p">)</span> - <span class="k">if</span> <span class="n">returnData</span><span class="p">:</span> - <span class="k">return</span> <span class="n">recon_id</span><span class="p">,</span> <span class="n">data2d</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">recon_id</span><span class="p">)</span> - <span class="k">else</span><span class="p">:</span> - <span class="k">return</span> <span class="n">recon_id</span> - -</div> -<div class="viewcode-block" id="create_projector"><a class="viewcode-back" href="../../creators.html#astra.creators.create_projector">[docs]</a><span class="k">def</span> <span class="nf">create_projector</span><span class="p">(</span><span class="n">proj_type</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">,</span> <span class="n">vol_geom</span><span class="p">):</span> - <span class="sd">"""Create a 2D projector.</span> - -<span class="sd">:param proj_type: Projector type, such as ``'line'``, ``'linear'``, ...</span> -<span class="sd">:type proj_type: :class:`string`</span> -<span class="sd">:param proj_geom: Projection geometry.</span> -<span class="sd">:type proj_geom: :class:`dict`</span> -<span class="sd">:param vol_geom: Volume geometry.</span> -<span class="sd">:type vol_geom: :class:`dict`</span> -<span class="sd">:returns: :class:`int` -- The ID of the projector.</span> - -<span class="sd">"""</span> - <span class="k">if</span> <span class="n">proj_type</span> <span class="o">==</span> <span class="s">'blob'</span><span class="p">:</span> - <span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s">'Blob type not yet implemented'</span><span class="p">)</span> - <span class="n">cfg</span> <span class="o">=</span> <span class="n">astra_dict</span><span class="p">(</span><span class="n">proj_type</span><span class="p">)</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'ProjectionGeometry'</span><span class="p">]</span> <span class="o">=</span> <span class="n">proj_geom</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'VolumeGeometry'</span><span class="p">]</span> <span class="o">=</span> <span class="n">vol_geom</span> - <span class="k">return</span> <span class="n">projector</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">cfg</span><span class="p">)</span></div> -</pre></div> - - </div> - </div> - </div> - <div class="sphinxsidebar"> - <div class="sphinxsidebarwrapper"> -<div id="searchbox" style="display: none"> - <h3>Quick search</h3> - <form class="search" action="../../search.html" method="get"> - <input type="text" name="q" /> - <input type="submit" value="Go" /> - <input type="hidden" name="check_keywords" value="yes" /> - <input type="hidden" name="area" value="default" /> - </form> - <p class="searchtip" style="font-size: 90%"> - Enter search terms or a module, class or function name. - </p> -</div> -<script type="text/javascript">$('#searchbox').show(0);</script> - </div> - </div> - <div class="clearer"></div> - </div> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="../../genindex.html" title="General Index" - >index</a></li> - <li class="right" > - <a href="../../py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li><a href="../../index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - <li><a href="../index.html" >Module code</a> »</li> - </ul> - </div> - - <div class="footer"> - © Copyright 2013, Centrum Wiskunde & Informatica, Amsterdam. - Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3. - </div> -<script> - (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ - (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), - m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) - })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); - - ga('create', 'UA-40340335-1', 'dmpelt.github.io'); - ga('send', 'pageview'); - -</script> - - </body> -</html>
\ No newline at end of file diff --git a/python/docSRC/_build/html/_modules/astra/data2d.html b/python/docSRC/_build/html/_modules/astra/data2d.html deleted file mode 100644 index d77cddd..0000000 --- a/python/docSRC/_build/html/_modules/astra/data2d.html +++ /dev/null @@ -1,225 +0,0 @@ -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" - "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> - - -<html xmlns="http://www.w3.org/1999/xhtml"> - <head> - <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> - - <title>astra.data2d — PyASTRAToolbox 1.6 documentation</title> - - <link rel="stylesheet" href="../../_static/default.css" type="text/css" /> - <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" /> - - <script type="text/javascript"> - var DOCUMENTATION_OPTIONS = { - URL_ROOT: '../../', - VERSION: '1.6', - COLLAPSE_INDEX: false, - FILE_SUFFIX: '.html', - HAS_SOURCE: true - }; - </script> - <script type="text/javascript" src="../../_static/jquery.js"></script> - <script type="text/javascript" src="../../_static/underscore.js"></script> - <script type="text/javascript" src="../../_static/doctools.js"></script> - <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script> - <link rel="top" title="PyASTRAToolbox 1.6 documentation" href="../../index.html" /> - <link rel="up" title="Module code" href="../index.html" /> - </head> - <body> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="../../genindex.html" title="General Index" - accesskey="I">index</a></li> - <li class="right" > - <a href="../../py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li><a href="../../index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - <li><a href="../index.html" accesskey="U">Module code</a> »</li> - </ul> - </div> - - <div class="document"> - <div class="documentwrapper"> - <div class="bodywrapper"> - <div class="body"> - - <h1>Source code for astra.data2d</h1><div class="highlight"><pre> -<span class="c">#-----------------------------------------------------------------------</span> -<span class="c">#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam</span> -<span class="c">#</span> -<span class="c">#Author: Daniel M. Pelt</span> -<span class="c">#Contact: D.M.Pelt@cwi.nl</span> -<span class="c">#Website: http://dmpelt.github.io/pyastratoolbox/</span> -<span class="c">#</span> -<span class="c">#</span> -<span class="c">#This file is part of the Python interface to the</span> -<span class="c">#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").</span> -<span class="c">#</span> -<span class="c">#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify</span> -<span class="c">#it under the terms of the GNU General Public License as published by</span> -<span class="c">#the Free Software Foundation, either version 3 of the License, or</span> -<span class="c">#(at your option) any later version.</span> -<span class="c">#</span> -<span class="c">#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,</span> -<span class="c">#but WITHOUT ANY WARRANTY; without even the implied warranty of</span> -<span class="c">#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span> -<span class="c">#GNU General Public License for more details.</span> -<span class="c">#</span> -<span class="c">#You should have received a copy of the GNU General Public License</span> -<span class="c">#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.</span> -<span class="c">#</span> -<span class="c">#-----------------------------------------------------------------------</span> -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">data2d_c</span> <span class="k">as</span> <span class="n">d</span> - -<div class="viewcode-block" id="clear"><a class="viewcode-back" href="../../data2d.html#astra.data2d.clear">[docs]</a><span class="k">def</span> <span class="nf">clear</span><span class="p">():</span> - <span class="sd">"""Clear all 2D data objects."""</span> - <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span> -</div> -<div class="viewcode-block" id="delete"><a class="viewcode-back" href="../../data2d.html#astra.data2d.delete">[docs]</a><span class="k">def</span> <span class="nf">delete</span><span class="p">(</span><span class="n">ids</span><span class="p">):</span> - <span class="sd">"""Delete a 2D object.</span> -<span class="sd"> </span> -<span class="sd"> :param ids: ID or list of ID's to delete.</span> -<span class="sd"> :type ids: :class:`int` or :class:`list`</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">ids</span><span class="p">)</span> -</div> -<div class="viewcode-block" id="create"><a class="viewcode-back" href="../../data2d.html#astra.data2d.create">[docs]</a><span class="k">def</span> <span class="nf">create</span><span class="p">(</span><span class="n">datatype</span><span class="p">,</span> <span class="n">geometry</span><span class="p">,</span> <span class="n">data</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span> - <span class="sd">"""Create a 2D object.</span> -<span class="sd"> </span> -<span class="sd"> :param datatype: Data object type, '-vol' or '-sino'.</span> -<span class="sd"> :type datatype: :class:`string`</span> -<span class="sd"> :param geometry: Volume or projection geometry.</span> -<span class="sd"> :type geometry: :class:`dict`</span> -<span class="sd"> :param data: Data to fill the constructed object with, either a scalar or array.</span> -<span class="sd"> :type data: :class:`float` or :class:`numpy.ndarray`</span> -<span class="sd"> :returns: :class:`int` -- the ID of the constructed object.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">datatype</span><span class="p">,</span><span class="n">geometry</span><span class="p">,</span><span class="n">data</span><span class="p">)</span> -</div> -<div class="viewcode-block" id="store"><a class="viewcode-back" href="../../data2d.html#astra.data2d.store">[docs]</a><span class="k">def</span> <span class="nf">store</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">data</span><span class="p">):</span> - <span class="sd">"""Fill existing 2D object with data.</span> -<span class="sd"> </span> -<span class="sd"> :param i: ID of object to fill.</span> -<span class="sd"> :type i: :class:`int`</span> -<span class="sd"> :param data: Data to fill the object with, either a scalar or array.</span> -<span class="sd"> :type data: :class:`float` or :class:`numpy.ndarray`</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">store</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">data</span><span class="p">)</span> - </div> -<div class="viewcode-block" id="get_geometry"><a class="viewcode-back" href="../../data2d.html#astra.data2d.get_geometry">[docs]</a><span class="k">def</span> <span class="nf">get_geometry</span><span class="p">(</span><span class="n">i</span><span class="p">):</span> - <span class="sd">"""Get the geometry of a 2D object.</span> -<span class="sd"> </span> -<span class="sd"> :param i: ID of object.</span> -<span class="sd"> :type i: :class:`int`</span> -<span class="sd"> :returns: :class:`dict` -- The geometry of object with ID ``i``.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">get_geometry</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> -</div> -<div class="viewcode-block" id="change_geometry"><a class="viewcode-back" href="../../data2d.html#astra.data2d.change_geometry">[docs]</a><span class="k">def</span> <span class="nf">change_geometry</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">geom</span><span class="p">):</span> - <span class="sd">"""Change the geometry of a 2D object.</span> -<span class="sd"> </span> -<span class="sd"> :param i: ID of object.</span> -<span class="sd"> :type i: :class:`int`</span> -<span class="sd"> :param geom: new geometry.</span> -<span class="sd"> :type geom: :class:`dict`</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">change_geometry</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">geom</span><span class="p">)</span> - </div> -<div class="viewcode-block" id="get"><a class="viewcode-back" href="../../data2d.html#astra.data2d.get">[docs]</a><span class="k">def</span> <span class="nf">get</span><span class="p">(</span><span class="n">i</span><span class="p">):</span> - <span class="sd">"""Get a 2D object.</span> -<span class="sd"> </span> -<span class="sd"> :param i: ID of object to get.</span> -<span class="sd"> :type i: :class:`int`</span> -<span class="sd"> :returns: :class:`numpy.ndarray` -- The object data.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> -</div> -<div class="viewcode-block" id="get_shared"><a class="viewcode-back" href="../../data2d.html#astra.data2d.get_shared">[docs]</a><span class="k">def</span> <span class="nf">get_shared</span><span class="p">(</span><span class="n">i</span><span class="p">):</span> - <span class="sd">"""Get a 2D object with memory shared between the ASTRA toolbox and numpy array.</span> -<span class="sd"> </span> -<span class="sd"> :param i: ID of object to get.</span> -<span class="sd"> :type i: :class:`int`</span> -<span class="sd"> :returns: :class:`numpy.ndarray` -- The object data.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">get_shared</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> - -</div> -<div class="viewcode-block" id="get_single"><a class="viewcode-back" href="../../data2d.html#astra.data2d.get_single">[docs]</a><span class="k">def</span> <span class="nf">get_single</span><span class="p">(</span><span class="n">i</span><span class="p">):</span> - <span class="sd">"""Get a 2D object in single precision.</span> -<span class="sd"> </span> -<span class="sd"> :param i: ID of object to get.</span> -<span class="sd"> :type i: :class:`int`</span> -<span class="sd"> :returns: :class:`numpy.ndarray` -- The object data.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">get_single</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> -</div> -<div class="viewcode-block" id="info"><a class="viewcode-back" href="../../data2d.html#astra.data2d.info">[docs]</a><span class="k">def</span> <span class="nf">info</span><span class="p">():</span> - <span class="sd">"""Print info on 2D objects in memory."""</span> - <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">info</span><span class="p">()</span></div> -</pre></div> - - </div> - </div> - </div> - <div class="sphinxsidebar"> - <div class="sphinxsidebarwrapper"> -<div id="searchbox" style="display: none"> - <h3>Quick search</h3> - <form class="search" action="../../search.html" method="get"> - <input type="text" name="q" /> - <input type="submit" value="Go" /> - <input type="hidden" name="check_keywords" value="yes" /> - <input type="hidden" name="area" value="default" /> - </form> - <p class="searchtip" style="font-size: 90%"> - Enter search terms or a module, class or function name. - </p> -</div> -<script type="text/javascript">$('#searchbox').show(0);</script> - </div> - </div> - <div class="clearer"></div> - </div> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="../../genindex.html" title="General Index" - 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\ No newline at end of file diff --git a/python/docSRC/_build/html/_modules/astra/data3d.html b/python/docSRC/_build/html/_modules/astra/data3d.html deleted file mode 100644 index 674d6d1..0000000 --- a/python/docSRC/_build/html/_modules/astra/data3d.html +++ /dev/null @@ -1,213 +0,0 @@ -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" - "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> - - -<html xmlns="http://www.w3.org/1999/xhtml"> - <head> - <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> - - <title>astra.data3d — PyASTRAToolbox 1.6 documentation</title> - - <link rel="stylesheet" href="../../_static/default.css" type="text/css" /> - <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" /> - - <script type="text/javascript"> - var DOCUMENTATION_OPTIONS = { - URL_ROOT: '../../', - VERSION: '1.6', - COLLAPSE_INDEX: false, - FILE_SUFFIX: '.html', - HAS_SOURCE: true - }; - </script> - <script type="text/javascript" src="../../_static/jquery.js"></script> - <script type="text/javascript" src="../../_static/underscore.js"></script> - <script type="text/javascript" src="../../_static/doctools.js"></script> - <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script> - <link rel="top" title="PyASTRAToolbox 1.6 documentation" href="../../index.html" /> - <link rel="up" title="Module code" href="../index.html" /> - </head> - <body> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="../../genindex.html" title="General Index" - accesskey="I">index</a></li> - <li class="right" > - <a href="../../py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li><a href="../../index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - <li><a href="../index.html" accesskey="U">Module code</a> »</li> - </ul> - </div> - - <div class="document"> - <div class="documentwrapper"> - <div class="bodywrapper"> - <div class="body"> - - <h1>Source code for astra.data3d</h1><div class="highlight"><pre> -<span class="c">#-----------------------------------------------------------------------</span> -<span class="c">#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam</span> -<span class="c">#</span> -<span class="c">#Author: Daniel M. Pelt</span> -<span class="c">#Contact: D.M.Pelt@cwi.nl</span> -<span class="c">#Website: http://dmpelt.github.io/pyastratoolbox/</span> -<span class="c">#</span> -<span class="c">#</span> -<span class="c">#This file is part of the Python interface to the</span> -<span class="c">#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").</span> -<span class="c">#</span> -<span class="c">#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify</span> -<span class="c">#it under the terms of the GNU General Public License as published by</span> -<span class="c">#the Free Software Foundation, either version 3 of the License, or</span> -<span class="c">#(at your option) any later version.</span> -<span class="c">#</span> -<span class="c">#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,</span> -<span class="c">#but WITHOUT ANY WARRANTY; without even the implied warranty of</span> -<span class="c">#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span> -<span class="c">#GNU General Public License for more details.</span> -<span class="c">#</span> -<span class="c">#You should have received a copy of the GNU General Public License</span> -<span class="c">#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.</span> -<span class="c">#</span> -<span class="c">#-----------------------------------------------------------------------</span> -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">data3d_c</span> <span class="k">as</span> <span class="n">d</span> - -<div class="viewcode-block" id="create"><a class="viewcode-back" href="../../data3d.html#astra.data3d.create">[docs]</a><span class="k">def</span> <span class="nf">create</span><span class="p">(</span><span class="n">datatype</span><span class="p">,</span><span class="n">geometry</span><span class="p">,</span><span class="n">data</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span> - <span class="sd">"""Create a 3D object.</span> -<span class="sd"> </span> -<span class="sd"> :param datatype: Data object type, '-vol' or '-sino'.</span> -<span class="sd"> :type datatype: :class:`string`</span> -<span class="sd"> :param geometry: Volume or projection geometry.</span> -<span class="sd"> :type geometry: :class:`dict`</span> -<span class="sd"> :param data: Data to fill the constructed object with, either a scalar or array.</span> -<span class="sd"> :type data: :class:`float` or :class:`numpy.ndarray`</span> -<span class="sd"> :returns: :class:`int` -- the ID of the constructed object.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">datatype</span><span class="p">,</span><span class="n">geometry</span><span class="p">,</span><span class="n">data</span><span class="p">)</span> -</div> -<div class="viewcode-block" id="get"><a class="viewcode-back" href="../../data3d.html#astra.data3d.get">[docs]</a><span class="k">def</span> <span class="nf">get</span><span class="p">(</span><span class="n">i</span><span class="p">):</span> - <span class="sd">"""Get a 3D object.</span> -<span class="sd"> </span> -<span class="sd"> :param i: ID of object to get.</span> -<span class="sd"> :type i: :class:`int`</span> -<span class="sd"> :returns: :class:`numpy.ndarray` -- The object data.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> -</div> -<div class="viewcode-block" id="get_shared"><a class="viewcode-back" href="../../data3d.html#astra.data3d.get_shared">[docs]</a><span class="k">def</span> <span class="nf">get_shared</span><span class="p">(</span><span class="n">i</span><span class="p">):</span> - <span class="sd">"""Get a 3D object with memory shared between the ASTRA toolbox and numpy array.</span> -<span class="sd"> </span> -<span class="sd"> :param i: ID of object to get.</span> -<span class="sd"> :type i: :class:`int`</span> -<span class="sd"> :returns: :class:`numpy.ndarray` -- The object data.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">get_shared</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> -</div> -<div class="viewcode-block" id="get_single"><a class="viewcode-back" href="../../data3d.html#astra.data3d.get_single">[docs]</a><span class="k">def</span> <span class="nf">get_single</span><span class="p">(</span><span class="n">i</span><span class="p">):</span> - <span class="sd">"""Get a 3D object in single precision.</span> -<span class="sd"> </span> -<span class="sd"> :param i: ID of object to get.</span> -<span class="sd"> :type i: :class:`int`</span> -<span class="sd"> :returns: :class:`numpy.ndarray` -- The object data.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">g</span><span class="o">.</span><span class="n">get_single</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> -</div> -<div class="viewcode-block" id="store"><a class="viewcode-back" href="../../data3d.html#astra.data3d.store">[docs]</a><span class="k">def</span> <span class="nf">store</span><span class="p">(</span><span class="n">i</span><span class="p">,</span><span class="n">data</span><span class="p">):</span> - <span class="sd">"""Fill existing 3D object with data.</span> -<span class="sd"> </span> -<span class="sd"> :param i: ID of object to fill.</span> -<span class="sd"> :type i: :class:`int`</span> -<span class="sd"> :param data: Data to fill the object with, either a scalar or array.</span> -<span class="sd"> :type data: :class:`float` or :class:`numpy.ndarray`</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">store</span><span class="p">(</span><span class="n">i</span><span class="p">,</span><span class="n">data</span><span class="p">)</span> -</div> -<div class="viewcode-block" id="dimensions"><a class="viewcode-back" href="../../data3d.html#astra.data3d.dimensions">[docs]</a><span class="k">def</span> <span class="nf">dimensions</span><span class="p">(</span><span class="n">i</span><span class="p">):</span> - <span class="sd">"""Get dimensions of a 3D object.</span> -<span class="sd"> </span> -<span class="sd"> :param i: ID of object.</span> -<span class="sd"> :type i: :class:`int`</span> -<span class="sd"> :returns: :class:`tuple` -- dimensions of object with ID ``i``.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">dimensions</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> -</div> -<div class="viewcode-block" id="delete"><a class="viewcode-back" href="../../data3d.html#astra.data3d.delete">[docs]</a><span class="k">def</span> <span class="nf">delete</span><span class="p">(</span><span class="n">ids</span><span class="p">):</span> - <span class="sd">"""Delete a 2D object.</span> -<span class="sd"> </span> -<span class="sd"> :param ids: ID or list of ID's to delete.</span> -<span class="sd"> :type ids: :class:`int` or :class:`list`</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">ids</span><span class="p">)</span> -</div> -<div class="viewcode-block" id="clear"><a class="viewcode-back" href="../../data3d.html#astra.data3d.clear">[docs]</a><span class="k">def</span> <span class="nf">clear</span><span class="p">():</span> - <span class="sd">"""Clear all 3D data objects."""</span> - <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span> -</div> -<div class="viewcode-block" id="info"><a class="viewcode-back" href="../../data3d.html#astra.data3d.info">[docs]</a><span class="k">def</span> <span class="nf">info</span><span class="p">():</span> - <span class="sd">"""Print info on 3D objects in memory."""</span> - <span class="k">return</span> <span class="n">d</span><span class="o">.</span><span class="n">info</span><span class="p">()</span></div> -</pre></div> - - </div> - </div> - </div> - <div class="sphinxsidebar"> - <div class="sphinxsidebarwrapper"> -<div id="searchbox" style="display: none"> - <h3>Quick search</h3> - <form class="search" action="../../search.html" method="get"> - <input type="text" name="q" /> - <input type="submit" value="Go" /> - <input type="hidden" name="check_keywords" value="yes" /> - <input type="hidden" name="area" value="default" /> - </form> - <p class="searchtip" style="font-size: 90%"> - Enter search terms or a module, class or function name. - </p> -</div> -<script type="text/javascript">$('#searchbox').show(0);</script> - </div> - </div> - <div class="clearer"></div> - </div> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="../../genindex.html" title="General Index" - >index</a></li> - <li class="right" > - <a href="../../py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li><a href="../../index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - <li><a href="../index.html" >Module code</a> »</li> - </ul> - </div> - - <div class="footer"> - © Copyright 2013, Centrum Wiskunde & Informatica, Amsterdam. - Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3. - </div> -<script> - (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ - (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), - m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) - })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); - - ga('create', 'UA-40340335-1', 'dmpelt.github.io'); - ga('send', 'pageview'); - -</script> - - </body> -</html>
\ No newline at end of file diff --git a/python/docSRC/_build/html/_modules/astra/functions.html b/python/docSRC/_build/html/_modules/astra/functions.html deleted file mode 100644 index 336431f..0000000 --- a/python/docSRC/_build/html/_modules/astra/functions.html +++ /dev/null @@ -1,375 +0,0 @@ -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" - "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> - - -<html xmlns="http://www.w3.org/1999/xhtml"> - <head> - <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> - - <title>astra.functions — PyASTRAToolbox 1.6 documentation</title> - - <link rel="stylesheet" href="../../_static/default.css" type="text/css" /> - <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" /> - - <script type="text/javascript"> - var DOCUMENTATION_OPTIONS = { - URL_ROOT: '../../', - VERSION: '1.6', - COLLAPSE_INDEX: false, - FILE_SUFFIX: '.html', - HAS_SOURCE: true - }; - </script> - <script type="text/javascript" src="../../_static/jquery.js"></script> - <script type="text/javascript" src="../../_static/underscore.js"></script> - <script type="text/javascript" src="../../_static/doctools.js"></script> - <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script> - <link rel="top" title="PyASTRAToolbox 1.6 documentation" href="../../index.html" /> - <link rel="up" title="Module code" href="../index.html" /> - </head> - <body> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="../../genindex.html" title="General Index" - accesskey="I">index</a></li> - <li class="right" > - <a href="../../py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li><a href="../../index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - <li><a href="../index.html" accesskey="U">Module code</a> »</li> - </ul> - </div> - - <div class="document"> - <div class="documentwrapper"> - <div class="bodywrapper"> - <div class="body"> - - <h1>Source code for astra.functions</h1><div class="highlight"><pre> -<span class="c">#-----------------------------------------------------------------------</span> -<span class="c"># Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam</span> -<span class="c">#</span> -<span class="c"># Author: Daniel M. Pelt</span> -<span class="c"># Contact: D.M.Pelt@cwi.nl</span> -<span class="c"># Website: http://dmpelt.github.io/pyastratoolbox/</span> -<span class="c">#</span> -<span class="c">#</span> -<span class="c"># This file is part of the Python interface to the</span> -<span class="c"># All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").</span> -<span class="c">#</span> -<span class="c"># The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify</span> -<span class="c"># it under the terms of the GNU General Public License as published by</span> -<span class="c"># the Free Software Foundation, either version 3 of the License, or</span> -<span class="c">#(at your option) any later version.</span> -<span class="c">#</span> -<span class="c"># The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,</span> -<span class="c"># but WITHOUT ANY WARRANTY; without even the implied warranty of</span> -<span class="c"># MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span> -<span class="c"># GNU General Public License for more details.</span> -<span class="c">#</span> -<span class="c"># You should have received a copy of the GNU General Public License</span> -<span class="c"># along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.</span> -<span class="c">#</span> -<span class="c">#-----------------------------------------------------------------------</span> -<span class="sd">"""Additional functions for PyAstraToolbox.</span> - -<span class="sd">.. moduleauthor:: Daniel M. Pelt <D.M.Pelt@cwi.nl></span> - - -<span class="sd">"""</span> - -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">creators</span> <span class="k">as</span> <span class="n">ac</span> -<span class="kn">import</span> <span class="nn">numpy</span> <span class="kn">as</span> <span class="nn">np</span> -<span class="kn">from</span> <span class="nn">six.moves</span> <span class="kn">import</span> <span class="nb">range</span> - -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">data2d</span> -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">data3d</span> -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">projector</span> -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">algorithm</span> - - - -<div class="viewcode-block" id="clear"><a class="viewcode-back" href="../../functions.html#astra.functions.clear">[docs]</a><span class="k">def</span> <span class="nf">clear</span><span class="p">():</span> - <span class="sd">"""Clears all used memory of the ASTRA Toolbox.</span> - -<span class="sd"> .. note::</span> -<span class="sd"> This is irreversible.</span> - -<span class="sd"> """</span> - <span class="n">data2d</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span> - <span class="n">data3d</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span> - <span class="n">projector</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span> - <span class="n">algorithm</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span> - -</div> -<div class="viewcode-block" id="data_op"><a class="viewcode-back" href="../../functions.html#astra.functions.data_op">[docs]</a><span class="k">def</span> <span class="nf">data_op</span><span class="p">(</span><span class="n">op</span><span class="p">,</span> <span class="n">data</span><span class="p">,</span> <span class="n">scalar</span><span class="p">,</span> <span class="n">gpu_core</span><span class="p">,</span> <span class="n">mask</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span> - <span class="sd">"""Perform data operation on data.</span> - -<span class="sd"> :param op: Operation to perform.</span> -<span class="sd"> :param data: Data to perform operation on.</span> -<span class="sd"> :param scalar: Scalar argument to data operation.</span> -<span class="sd"> :param gpu_core: GPU core to perform operation on.</span> -<span class="sd"> :param mask: Optional mask.</span> - -<span class="sd"> """</span> - - <span class="n">cfg</span> <span class="o">=</span> <span class="n">ac</span><span class="o">.</span><span class="n">astra_dict</span><span class="p">(</span><span class="s">'DataOperation_CUDA'</span><span class="p">)</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'Operation'</span><span class="p">]</span> <span class="o">=</span> <span class="n">op</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'Scalar'</span><span class="p">]</span> <span class="o">=</span> <span class="n">scalar</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'DataId'</span><span class="p">]</span> <span class="o">=</span> <span class="n">data</span> - <span class="k">if</span> <span class="ow">not</span> <span class="n">mask</span> <span class="o">==</span> <span class="bp">None</span><span class="p">:</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'MaskId'</span><span class="p">]</span> <span class="o">=</span> <span class="n">mask</span> - <span class="n">cfg</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'GPUindex'</span><span class="p">]</span> <span class="o">=</span> <span class="n">gpu_core</span> - <span class="n">alg_id</span> <span class="o">=</span> <span class="n">algorithm</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">cfg</span><span class="p">)</span> - <span class="n">algorithm</span><span class="o">.</span><span class="n">run</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span> - <span class="n">algorithm</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">alg_id</span><span class="p">)</span> - -</div> -<div class="viewcode-block" id="add_noise_to_sino"><a class="viewcode-back" href="../../functions.html#astra.functions.add_noise_to_sino">[docs]</a><span class="k">def</span> <span class="nf">add_noise_to_sino</span><span class="p">(</span><span class="n">sinogram_in</span><span class="p">,</span> <span class="n">I0</span><span class="p">,</span> <span class="n">seed</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span> - <span class="sd">"""Adds Poisson noise to a sinogram.</span> - -<span class="sd"> :param sinogram_in: Sinogram to add noise to.</span> -<span class="sd"> :type sinogram_in: :class:`numpy.ndarray`</span> -<span class="sd"> :param I0: Background intensity. Lower values lead to higher noise.</span> -<span class="sd"> :type I0: :class:`float`</span> -<span class="sd"> :returns: :class:`numpy.ndarray` -- the sinogram with added noise.</span> - -<span class="sd"> """</span> - - <span class="k">if</span> <span class="ow">not</span> <span class="n">seed</span><span class="o">==</span><span class="bp">None</span><span class="p">:</span> - <span class="n">curstate</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">get_state</span><span class="p">()</span> - <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">seed</span><span class="p">(</span><span class="n">seed</span><span class="p">)</span> - - <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">sinogram_in</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span> - <span class="n">sinogramRaw</span> <span class="o">=</span> <span class="n">sinogram_in</span> - <span class="k">else</span><span class="p">:</span> - <span class="n">sinogramRaw</span> <span class="o">=</span> <span class="n">data2d</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">sinogram_in</span><span class="p">)</span> - <span class="n">max_sinogramRaw</span> <span class="o">=</span> <span class="n">sinogramRaw</span><span class="o">.</span><span class="n">max</span><span class="p">()</span> - <span class="n">sinogramRawScaled</span> <span class="o">=</span> <span class="n">sinogramRaw</span> <span class="o">/</span> <span class="n">max_sinogramRaw</span> - <span class="c"># to detector count</span> - <span class="n">sinogramCT</span> <span class="o">=</span> <span class="n">I0</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">exp</span><span class="p">(</span><span class="o">-</span><span class="n">sinogramRawScaled</span><span class="p">)</span> - <span class="c"># add poison noise</span> - <span class="n">sinogramCT_C</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros_like</span><span class="p">(</span><span class="n">sinogramCT</span><span class="p">)</span> - <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">sinogramCT_C</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">]):</span> - <span class="k">for</span> <span class="n">j</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">sinogramCT_C</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">1</span><span class="p">]):</span> - <span class="n">sinogramCT_C</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">poisson</span><span class="p">(</span><span class="n">sinogramCT</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="n">j</span><span class="p">])</span> - <span class="c"># to density</span> - <span class="n">sinogramCT_D</span> <span class="o">=</span> <span class="n">sinogramCT_C</span> <span class="o">/</span> <span class="n">I0</span> - <span class="n">sinogram_out</span> <span class="o">=</span> <span class="o">-</span><span class="n">max_sinogramRaw</span> <span class="o">*</span> <span class="n">np</span><span class="o">.</span><span class="n">log</span><span class="p">(</span><span class="n">sinogramCT_D</span><span class="p">)</span> - - <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">sinogram_in</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">ndarray</span><span class="p">):</span> - <span class="n">at</span><span class="o">.</span><span class="n">data2d</span><span class="o">.</span><span class="n">store</span><span class="p">(</span><span class="n">sinogram_in</span><span class="p">,</span> <span class="n">sinogram_out</span><span class="p">)</span> - - <span class="k">if</span> <span class="ow">not</span> <span class="n">seed</span><span class="o">==</span><span class="bp">None</span><span class="p">:</span> - <span class="n">np</span><span class="o">.</span><span class="n">random</span><span class="o">.</span><span class="n">set_state</span><span class="p">(</span><span class="n">curstate</span><span class="p">)</span> - - <span class="k">return</span> <span class="n">sinogram_out</span> -</div> -<div class="viewcode-block" id="move_vol_geom"><a class="viewcode-back" href="../../functions.html#astra.functions.move_vol_geom">[docs]</a><span class="k">def</span> <span class="nf">move_vol_geom</span><span class="p">(</span><span class="n">geom</span><span class="p">,</span> <span class="n">pos</span><span class="p">,</span> <span class="n">is_relative</span><span class="o">=</span><span class="bp">False</span><span class="p">):</span> - <span class="sd">"""Moves center of volume geometry to new position.</span> - -<span class="sd"> :param geom: Input volume geometry</span> -<span class="sd"> :type geom: :class:`dict`</span> -<span class="sd"> :param pos: Tuple (x,y[,z]) for new position, with the center of the image at (0,0[,0])</span> -<span class="sd"> :type pos: :class:`tuple`</span> -<span class="sd"> :param is_relative: Whether new position is relative to the old position</span> -<span class="sd"> :type is_relative: :class:`bool`</span> -<span class="sd"> :returns: :class:`dict` -- Volume geometry with the new center</span> -<span class="sd"> """</span> - - <span class="n">ret_geom</span> <span class="o">=</span> <span class="n">geom</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span> - <span class="n">ret_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">]</span> <span class="o">=</span> <span class="n">geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">]</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span> - - <span class="k">if</span> <span class="ow">not</span> <span class="n">is_relative</span><span class="p">:</span> - <span class="n">ret_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMinX'</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">geom</span><span class="p">[</span><span class="s">'GridColCount'</span><span class="p">]</span><span class="o">/</span><span class="mf">2.</span> - <span class="n">ret_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMaxX'</span><span class="p">]</span> <span class="o">=</span> <span class="n">geom</span><span class="p">[</span><span class="s">'GridColCount'</span><span class="p">]</span><span class="o">/</span><span class="mf">2.</span> - <span class="n">ret_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMinY'</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">geom</span><span class="p">[</span><span class="s">'GridRowCount'</span><span class="p">]</span><span class="o">/</span><span class="mf">2.</span> - <span class="n">ret_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMaxY'</span><span class="p">]</span> <span class="o">=</span> <span class="n">geom</span><span class="p">[</span><span class="s">'GridRowCount'</span><span class="p">]</span><span class="o">/</span><span class="mf">2.</span> - <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">pos</span><span class="p">)</span><span class="o">></span><span class="mi">2</span><span class="p">:</span> - <span class="n">ret_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMinZ'</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">geom</span><span class="p">[</span><span class="s">'GridSliceCount'</span><span class="p">]</span><span class="o">/</span><span class="mf">2.</span> - <span class="n">ret_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMaxZ'</span><span class="p">]</span> <span class="o">=</span> <span class="n">geom</span><span class="p">[</span><span class="s">'GridSliceCount'</span><span class="p">]</span><span class="o">/</span><span class="mf">2.</span> - <span class="n">ret_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMinX'</span><span class="p">]</span> <span class="o">+=</span> <span class="n">pos</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> - <span class="n">ret_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMaxX'</span><span class="p">]</span> <span class="o">+=</span> <span class="n">pos</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> - <span class="n">ret_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMinY'</span><span class="p">]</span> <span class="o">+=</span> <span class="n">pos</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> - <span class="n">ret_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMaxY'</span><span class="p">]</span> <span class="o">+=</span> <span class="n">pos</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> - <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">pos</span><span class="p">)</span><span class="o">></span><span class="mi">2</span><span class="p">:</span> - <span class="n">ret_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMinZ'</span><span class="p">]</span> <span class="o">+=</span> <span class="n">pos</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> - <span class="n">ret_geom</span><span class="p">[</span><span class="s">'option'</span><span class="p">][</span><span class="s">'WindowMaxZ'</span><span class="p">]</span> <span class="o">+=</span> <span class="n">pos</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> - <span class="k">return</span> <span class="n">ret_geom</span> - -</div> -<div class="viewcode-block" id="geom_size"><a class="viewcode-back" href="../../functions.html#astra.functions.geom_size">[docs]</a><span class="k">def</span> <span class="nf">geom_size</span><span class="p">(</span><span class="n">geom</span><span class="p">,</span> <span class="n">dim</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span> - <span class="sd">"""Returns the size of a volume or sinogram, based on the projection or volume geometry.</span> - -<span class="sd"> :param geom: Geometry to calculate size from</span> -<span class="sd"> :type geometry: :class:`dict`</span> -<span class="sd"> :param dim: Optional axis index to return</span> -<span class="sd"> :type dim: :class:`int`</span> -<span class="sd"> """</span> - - <span class="k">if</span> <span class="s">'GridSliceCount'</span> <span class="ow">in</span> <span class="n">geom</span><span class="p">:</span> - <span class="c"># 3D Volume geometry?</span> - <span class="n">s</span> <span class="o">=</span> <span class="p">(</span><span class="n">geom</span><span class="p">[</span><span class="s">'GridSliceCount'</span><span class="p">],</span> <span class="n">geom</span><span class="p">[</span> - <span class="s">'GridRowCount'</span><span class="p">],</span> <span class="n">geom</span><span class="p">[</span><span class="s">'GridColCount'</span><span class="p">])</span> - <span class="k">elif</span> <span class="s">'GridColCount'</span> <span class="ow">in</span> <span class="n">geom</span><span class="p">:</span> - <span class="c"># 2D Volume geometry?</span> - <span class="n">s</span> <span class="o">=</span> <span class="p">(</span><span class="n">geom</span><span class="p">[</span><span class="s">'GridRowCount'</span><span class="p">],</span> <span class="n">geom</span><span class="p">[</span><span class="s">'GridColCount'</span><span class="p">])</span> - <span class="k">elif</span> <span class="n">geom</span><span class="p">[</span><span class="s">'type'</span><span class="p">]</span> <span class="o">==</span> <span class="s">'parallel'</span> <span class="ow">or</span> <span class="n">geom</span><span class="p">[</span><span class="s">'type'</span><span class="p">]</span> <span class="o">==</span> <span class="s">'fanflat'</span><span class="p">:</span> - <span class="n">s</span> <span class="o">=</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">geom</span><span class="p">[</span><span class="s">'ProjectionAngles'</span><span class="p">]),</span> <span class="n">geom</span><span class="p">[</span><span class="s">'DetectorCount'</span><span class="p">])</span> - <span class="k">elif</span> <span class="n">geom</span><span class="p">[</span><span class="s">'type'</span><span class="p">]</span> <span class="o">==</span> <span class="s">'parallel3d'</span> <span class="ow">or</span> <span class="n">geom</span><span class="p">[</span><span class="s">'type'</span><span class="p">]</span> <span class="o">==</span> <span class="s">'cone'</span><span class="p">:</span> - <span class="n">s</span> <span class="o">=</span> <span class="p">(</span><span class="n">geom</span><span class="p">[</span><span class="s">'DetectorRowCount'</span><span class="p">],</span> <span class="nb">len</span><span class="p">(</span> - <span class="n">geom</span><span class="p">[</span><span class="s">'ProjectionAngles'</span><span class="p">]),</span> <span class="n">geom</span><span class="p">[</span><span class="s">'DetectorColCount'</span><span class="p">])</span> - <span class="k">elif</span> <span class="n">geom</span><span class="p">[</span><span class="s">'type'</span><span class="p">]</span> <span class="o">==</span> <span class="s">'fanflat_vec'</span><span class="p">:</span> - <span class="n">s</span> <span class="o">=</span> <span class="p">(</span><span class="n">geom</span><span class="p">[</span><span class="s">'Vectors'</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">geom</span><span class="p">[</span><span class="s">'DetectorCount'</span><span class="p">])</span> - <span class="k">elif</span> <span class="n">geom</span><span class="p">[</span><span class="s">'type'</span><span class="p">]</span> <span class="o">==</span> <span class="s">'parallel3d_vec'</span> <span class="ow">or</span> <span class="n">geom</span><span class="p">[</span><span class="s">'type'</span><span class="p">]</span> <span class="o">==</span> <span class="s">'cone_vec'</span><span class="p">:</span> - <span class="n">s</span> <span class="o">=</span> <span class="p">(</span><span class="n">geom</span><span class="p">[</span><span class="s">'DetectorRowCount'</span><span class="p">],</span> <span class="n">geom</span><span class="p">[</span> - <span class="s">'Vectors'</span><span class="p">]</span><span class="o">.</span><span class="n">shape</span><span class="p">[</span><span class="mi">0</span><span class="p">],</span> <span class="n">geom</span><span class="p">[</span><span class="s">'DetectorColCount'</span><span class="p">])</span> - - <span class="k">if</span> <span class="n">dim</span> <span class="o">!=</span> <span class="bp">None</span><span class="p">:</span> - <span class="n">s</span> <span class="o">=</span> <span class="n">s</span><span class="p">[</span><span class="n">dim</span><span class="p">]</span> - - <span class="k">return</span> <span class="n">s</span> - -</div> -<div class="viewcode-block" id="geom_2vec"><a class="viewcode-back" href="../../functions.html#astra.functions.geom_2vec">[docs]</a><span class="k">def</span> <span class="nf">geom_2vec</span><span class="p">(</span><span class="n">proj_geom</span><span class="p">):</span> - <span class="sd">"""Returns a vector-based projection geometry from a basic projection geometry.</span> - -<span class="sd"> :param proj_geom: Projection geometry to convert</span> -<span class="sd"> :type proj_geom: :class:`dict`</span> -<span class="sd"> """</span> - <span class="k">if</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'type'</span><span class="p">]</span> <span class="o">==</span> <span class="s">'fanflat'</span><span class="p">:</span> - <span class="n">angles</span> <span class="o">=</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'ProjectionAngles'</span><span class="p">]</span> - <span class="n">vectors</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="nb">len</span><span class="p">(</span><span class="n">angles</span><span class="p">),</span> <span class="mi">6</span><span class="p">))</span> - <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">angles</span><span class="p">)):</span> - - <span class="c"># source</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DistanceOriginSource'</span><span class="p">]</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DistanceOriginSource'</span><span class="p">]</span> - - <span class="c"># center of detector</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">2</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DistanceOriginDetector'</span><span class="p">]</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">3</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DistanceOriginDetector'</span><span class="p">]</span> - - <span class="c"># vector from detector pixel 0 to 1</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">4</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DetectorWidth'</span><span class="p">]</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">5</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DetectorWidth'</span><span class="p">]</span> - <span class="n">proj_geom_out</span> <span class="o">=</span> <span class="n">ac</span><span class="o">.</span><span class="n">create_proj_geom</span><span class="p">(</span> - <span class="s">'fanflat_vec'</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DetectorCount'</span><span class="p">],</span> <span class="n">vectors</span><span class="p">)</span> - - <span class="k">elif</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'type'</span><span class="p">]</span> <span class="o">==</span> <span class="s">'cone'</span><span class="p">:</span> - <span class="n">angles</span> <span class="o">=</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'ProjectionAngles'</span><span class="p">]</span> - <span class="n">vectors</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="nb">len</span><span class="p">(</span><span class="n">angles</span><span class="p">),</span> <span class="mi">12</span><span class="p">))</span> - <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">angles</span><span class="p">)):</span> - <span class="c"># source</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DistanceOriginSource'</span><span class="p">]</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DistanceOriginSource'</span><span class="p">]</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">2</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span> - - <span class="c"># center of detector</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">3</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DistanceOriginDetector'</span><span class="p">]</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">4</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DistanceOriginDetector'</span><span class="p">]</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">5</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span> - - <span class="c"># vector from detector pixel (0,0) to (0,1)</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">6</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DetectorSpacingX'</span><span class="p">]</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">7</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DetectorSpacingX'</span><span class="p">]</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">8</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span> - - <span class="c"># vector from detector pixel (0,0) to (1,0)</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">9</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">10</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">11</span><span class="p">]</span> <span class="o">=</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DetectorSpacingY'</span><span class="p">]</span> - - <span class="n">proj_geom_out</span> <span class="o">=</span> <span class="n">ac</span><span class="o">.</span><span class="n">create_proj_geom</span><span class="p">(</span> - <span class="s">'cone_vec'</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DetectorRowCount'</span><span class="p">],</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DetectorColCount'</span><span class="p">],</span> <span class="n">vectors</span><span class="p">)</span> - - <span class="c"># PARALLEL</span> - <span class="k">elif</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'type'</span><span class="p">]</span> <span class="o">==</span> <span class="s">'parallel3d'</span><span class="p">:</span> - <span class="n">angles</span> <span class="o">=</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'ProjectionAngles'</span><span class="p">]</span> - <span class="n">vectors</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="nb">len</span><span class="p">(</span><span class="n">angles</span><span class="p">),</span> <span class="mi">12</span><span class="p">))</span> - <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">angles</span><span class="p">)):</span> - - <span class="c"># ray direction</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">1</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">2</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span> - - <span class="c"># center of detector</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">3</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">4</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">5</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span> - - <span class="c"># vector from detector pixel (0,0) to (0,1)</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">6</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">cos</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DetectorSpacingX'</span><span class="p">]</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">7</span><span class="p">]</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sin</span><span class="p">(</span><span class="n">angles</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">*</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DetectorSpacingX'</span><span class="p">]</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">8</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span> - - <span class="c"># vector from detector pixel (0,0) to (1,0)</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">9</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">10</span><span class="p">]</span> <span class="o">=</span> <span class="mi">0</span> - <span class="n">vectors</span><span class="p">[</span><span class="n">i</span><span class="p">,</span> <span class="mi">11</span><span class="p">]</span> <span class="o">=</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DetectorSpacingY'</span><span class="p">]</span> - - <span class="n">proj_geom_out</span> <span class="o">=</span> <span class="n">ac</span><span class="o">.</span><span class="n">create_proj_geom</span><span class="p">(</span> - <span class="s">'parallel3d_vec'</span><span class="p">,</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DetectorRowCount'</span><span class="p">],</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'DetectorColCount'</span><span class="p">],</span> <span class="n">vectors</span><span class="p">)</span> - - <span class="k">else</span><span class="p">:</span> - <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span> - <span class="s">'No suitable vector geometry found for type: '</span> <span class="o">+</span> <span class="n">proj_geom</span><span class="p">[</span><span class="s">'type'</span><span class="p">])</span> - <span class="k">return</span> <span class="n">proj_geom_out</span></div> -</pre></div> - - </div> - </div> - </div> - <div class="sphinxsidebar"> - <div class="sphinxsidebarwrapper"> -<div id="searchbox" style="display: none"> - <h3>Quick search</h3> - <form class="search" action="../../search.html" method="get"> - <input type="text" name="q" /> - <input type="submit" value="Go" /> - <input type="hidden" name="check_keywords" value="yes" /> - <input type="hidden" name="area" value="default" /> - </form> - <p class="searchtip" style="font-size: 90%"> - Enter search terms or a module, class or function name. - </p> -</div> -<script type="text/javascript">$('#searchbox').show(0);</script> - 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\ No newline at end of file diff --git a/python/docSRC/_build/html/_modules/astra/matlab.html b/python/docSRC/_build/html/_modules/astra/matlab.html deleted file mode 100644 index b58ff06..0000000 --- a/python/docSRC/_build/html/_modules/astra/matlab.html +++ /dev/null @@ -1,217 +0,0 @@ -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" - "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> - - -<html xmlns="http://www.w3.org/1999/xhtml"> - <head> - <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> - - <title>astra.matlab — PyASTRAToolbox 1.6 documentation</title> - - <link rel="stylesheet" href="../../_static/default.css" type="text/css" /> - <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" /> - - <script type="text/javascript"> - var DOCUMENTATION_OPTIONS = { - URL_ROOT: '../../', - VERSION: '1.6', - COLLAPSE_INDEX: false, - FILE_SUFFIX: '.html', - HAS_SOURCE: true - }; - </script> - <script type="text/javascript" src="../../_static/jquery.js"></script> - <script type="text/javascript" src="../../_static/underscore.js"></script> - <script type="text/javascript" src="../../_static/doctools.js"></script> - <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script> - <link rel="top" title="PyASTRAToolbox 1.6 documentation" href="../../index.html" /> - <link rel="up" title="Module code" href="../index.html" /> - </head> - <body> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="../../genindex.html" title="General Index" - accesskey="I">index</a></li> - <li class="right" > - <a href="../../py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li><a href="../../index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - <li><a href="../index.html" accesskey="U">Module code</a> »</li> - </ul> - </div> - - <div class="document"> - <div class="documentwrapper"> - <div class="bodywrapper"> - <div class="body"> - - <h1>Source code for astra.matlab</h1><div class="highlight"><pre> -<span class="c">#-----------------------------------------------------------------------</span> -<span class="c">#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam</span> -<span class="c">#</span> -<span class="c">#Author: Daniel M. Pelt</span> -<span class="c">#Contact: D.M.Pelt@cwi.nl</span> -<span class="c">#Website: http://dmpelt.github.io/pyastratoolbox/</span> -<span class="c">#</span> -<span class="c">#</span> -<span class="c">#This file is part of the Python interface to the</span> -<span class="c">#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").</span> -<span class="c">#</span> -<span class="c">#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify</span> -<span class="c">#it under the terms of the GNU General Public License as published by</span> -<span class="c">#the Free Software Foundation, either version 3 of the License, or</span> -<span class="c">#(at your option) any later version.</span> -<span class="c">#</span> -<span class="c">#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,</span> -<span class="c">#but WITHOUT ANY WARRANTY; without even the implied warranty of</span> -<span class="c">#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span> -<span class="c">#GNU General Public License for more details.</span> -<span class="c">#</span> -<span class="c">#You should have received a copy of the GNU General Public License</span> -<span class="c">#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.</span> -<span class="c">#</span> -<span class="c">#-----------------------------------------------------------------------</span> -<span class="sd">"""This module implements a MATLAB-like interface to the ASTRA Toolbox.</span> - -<span class="sd">Note that all functions are called with a :class:`string` as the first</span> -<span class="sd">argument, specifying the operation to perform. This un-pythonic way</span> -<span class="sd">is used to make transitioning from MATLAB code to Python code easier, as</span> -<span class="sd">the MATLAB interface uses the same type of method calling.</span> - -<span class="sd">After an initial ``import astra``, these functions can be accessed in the</span> -<span class="sd">``astra.m`` module.</span> - -<span class="sd">"""</span> - -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">astra_c</span> -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">data2d_c</span> -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">data3d_c</span> -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">projector_c</span> -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">algorithm_c</span> -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">matrix_c</span> -<span class="kn">import</span> <span class="nn">numpy</span> <span class="kn">as</span> <span class="nn">np</span> - - -<div class="viewcode-block" id="astra"><a class="viewcode-back" href="../../matlab.html#astra.matlab.astra">[docs]</a><span class="k">def</span> <span class="nf">astra</span><span class="p">(</span><span class="n">command</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">):</span> - <span class="sd">"""MATLAB-like interface to the :mod:`astra.astra` module</span> -<span class="sd"> </span> -<span class="sd"> For example:</span> -<span class="sd"> </span> -<span class="sd"> ``astra.m.astra('use_cuda')`` -- Check if CUDA is enabled.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">astra_c</span><span class="p">,</span> <span class="n">command</span><span class="p">)(</span><span class="o">*</span><span class="n">args</span><span class="p">)</span> - -</div> -<div class="viewcode-block" id="data2d"><a class="viewcode-back" href="../../matlab.html#astra.matlab.data2d">[docs]</a><span class="k">def</span> <span class="nf">data2d</span><span class="p">(</span><span class="n">command</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">):</span> - <span class="sd">"""MATLAB-like interface to the :mod:`astra.data2d` module</span> -<span class="sd"> </span> -<span class="sd"> For example:</span> -<span class="sd"> </span> -<span class="sd"> ``astra.m.data2d('create',type,geometry,data)`` -- Create a 2D object.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">data2d_c</span><span class="p">,</span> <span class="n">command</span><span class="p">)(</span><span class="o">*</span><span class="n">args</span><span class="p">)</span> - -</div> -<div class="viewcode-block" id="data3d"><a class="viewcode-back" href="../../matlab.html#astra.matlab.data3d">[docs]</a><span class="k">def</span> <span class="nf">data3d</span><span class="p">(</span><span class="n">command</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">):</span> - <span class="sd">"""MATLAB-like interface to the :mod:`astra.data3d` module</span> -<span class="sd"> </span> -<span class="sd"> For example:</span> -<span class="sd"> </span> -<span class="sd"> ``astra.m.data3d('get',i)`` -- Get 3D object data.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">data3d_c</span><span class="p">,</span> <span class="n">command</span><span class="p">)(</span><span class="o">*</span><span class="n">args</span><span class="p">)</span> - -</div> -<div class="viewcode-block" id="projector"><a class="viewcode-back" href="../../matlab.html#astra.matlab.projector">[docs]</a><span class="k">def</span> <span class="nf">projector</span><span class="p">(</span><span class="n">command</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">):</span> - <span class="sd">"""MATLAB-like interface to the :mod:`astra.projector` module</span> -<span class="sd"> </span> -<span class="sd"> For example:</span> -<span class="sd"> </span> -<span class="sd"> ``astra.m.projector('volume_geometry',i)`` -- Get volume geometry.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">projector_c</span><span class="p">,</span> <span class="n">command</span><span class="p">)(</span><span class="o">*</span><span class="n">args</span><span class="p">)</span> - -</div> -<div class="viewcode-block" id="matrix"><a class="viewcode-back" href="../../matlab.html#astra.matlab.matrix">[docs]</a><span class="k">def</span> <span class="nf">matrix</span><span class="p">(</span><span class="n">command</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">):</span> - <span class="sd">"""MATLAB-like interface to the :mod:`astra.matrix` module</span> -<span class="sd"> </span> -<span class="sd"> For example:</span> -<span class="sd"> </span> -<span class="sd"> ``astra.m.matrix('delete',i)`` -- Delete a matrix.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">matrix_c</span><span class="p">,</span> <span class="n">command</span><span class="p">)(</span><span class="o">*</span><span class="n">args</span><span class="p">)</span> - -</div> -<div class="viewcode-block" id="algorithm"><a class="viewcode-back" href="../../matlab.html#astra.matlab.algorithm">[docs]</a><span class="k">def</span> <span class="nf">algorithm</span><span class="p">(</span><span class="n">command</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">):</span> - <span class="sd">"""MATLAB-like interface to the :mod:`astra.algorithm` module</span> -<span class="sd"> </span> -<span class="sd"> For example:</span> -<span class="sd"> </span> -<span class="sd"> ``astra.m.algorithm('run',i,1000)`` -- Run an algorithm with 1000 iterations.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">if</span> <span class="n">command</span> <span class="o">==</span> <span class="s">'iterate'</span><span class="p">:</span> - <span class="n">command</span> <span class="o">=</span> <span class="s">'run'</span> - <span class="k">return</span> <span class="nb">getattr</span><span class="p">(</span><span class="n">algorithm_c</span><span class="p">,</span> <span class="n">command</span><span class="p">)(</span><span class="o">*</span><span class="n">args</span><span class="p">)</span></div> -</pre></div> - - </div> - </div> - </div> - <div class="sphinxsidebar"> - <div class="sphinxsidebarwrapper"> -<div id="searchbox" style="display: none"> - <h3>Quick search</h3> - <form class="search" action="../../search.html" method="get"> - <input type="text" name="q" /> - <input type="submit" value="Go" /> - <input type="hidden" name="check_keywords" value="yes" /> - <input type="hidden" name="area" value="default" /> - </form> - <p class="searchtip" style="font-size: 90%"> - Enter search terms or a module, class or function name. - </p> -</div> -<script type="text/javascript">$('#searchbox').show(0);</script> - </div> - </div> - <div class="clearer"></div> - </div> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="../../genindex.html" title="General Index" - >index</a></li> - <li class="right" > - <a href="../../py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li><a href="../../index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - <li><a href="../index.html" >Module code</a> »</li> - </ul> - </div> - - <div class="footer"> - © Copyright 2013, Centrum Wiskunde & Informatica, Amsterdam. - Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3. - </div> -<script> - (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ - (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), - m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) - })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); - - ga('create', 'UA-40340335-1', 'dmpelt.github.io'); - ga('send', 'pageview'); - -</script> - - </body> -</html>
\ No newline at end of file diff --git a/python/docSRC/_build/html/_modules/astra/matrix.html b/python/docSRC/_build/html/_modules/astra/matrix.html deleted file mode 100644 index 5f75455..0000000 --- a/python/docSRC/_build/html/_modules/astra/matrix.html +++ /dev/null @@ -1,191 +0,0 @@ -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" - "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> - - -<html xmlns="http://www.w3.org/1999/xhtml"> - <head> - <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> - - <title>astra.matrix — PyASTRAToolbox 1.6 documentation</title> - - <link rel="stylesheet" href="../../_static/default.css" type="text/css" /> - <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" /> - - <script type="text/javascript"> - var DOCUMENTATION_OPTIONS = { - URL_ROOT: '../../', - VERSION: '1.6', - COLLAPSE_INDEX: false, - FILE_SUFFIX: '.html', - HAS_SOURCE: true - }; - </script> - <script type="text/javascript" src="../../_static/jquery.js"></script> - <script type="text/javascript" src="../../_static/underscore.js"></script> - <script type="text/javascript" src="../../_static/doctools.js"></script> - <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script> - <link rel="top" title="PyASTRAToolbox 1.6 documentation" href="../../index.html" /> - <link rel="up" title="Module code" href="../index.html" /> - </head> - <body> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="../../genindex.html" title="General Index" - accesskey="I">index</a></li> - <li class="right" > - <a href="../../py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li><a href="../../index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - <li><a href="../index.html" accesskey="U">Module code</a> »</li> - </ul> - </div> - - <div class="document"> - <div class="documentwrapper"> - <div class="bodywrapper"> - <div class="body"> - - <h1>Source code for astra.matrix</h1><div class="highlight"><pre> -<span class="c">#-----------------------------------------------------------------------</span> -<span class="c">#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam</span> -<span class="c">#</span> -<span class="c">#Author: Daniel M. Pelt</span> -<span class="c">#Contact: D.M.Pelt@cwi.nl</span> -<span class="c">#Website: http://dmpelt.github.io/pyastratoolbox/</span> -<span class="c">#</span> -<span class="c">#</span> -<span class="c">#This file is part of the Python interface to the</span> -<span class="c">#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").</span> -<span class="c">#</span> -<span class="c">#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify</span> -<span class="c">#it under the terms of the GNU General Public License as published by</span> -<span class="c">#the Free Software Foundation, either version 3 of the License, or</span> -<span class="c">#(at your option) any later version.</span> -<span class="c">#</span> -<span class="c">#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,</span> -<span class="c">#but WITHOUT ANY WARRANTY; without even the implied warranty of</span> -<span class="c">#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span> -<span class="c">#GNU General Public License for more details.</span> -<span class="c">#</span> -<span class="c">#You should have received a copy of the GNU General Public License</span> -<span class="c">#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.</span> -<span class="c">#</span> -<span class="c">#-----------------------------------------------------------------------</span> -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">matrix_c</span> <span class="k">as</span> <span class="n">m</span> - -<div class="viewcode-block" id="delete"><a class="viewcode-back" href="../../matrix.html#astra.matrix.delete">[docs]</a><span class="k">def</span> <span class="nf">delete</span><span class="p">(</span><span class="n">ids</span><span class="p">):</span> - <span class="sd">"""Delete a matrix object.</span> -<span class="sd"> </span> -<span class="sd"> :param ids: ID or list of ID's to delete.</span> -<span class="sd"> :type ids: :class:`int` or :class:`list`</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">m</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">ids</span><span class="p">)</span> -</div> -<div class="viewcode-block" id="clear"><a class="viewcode-back" href="../../matrix.html#astra.matrix.clear">[docs]</a><span class="k">def</span> <span class="nf">clear</span><span class="p">():</span> - <span class="sd">"""Clear all matrix objects."""</span> - <span class="k">return</span> <span class="n">m</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span> -</div> -<div class="viewcode-block" id="create"><a class="viewcode-back" href="../../matrix.html#astra.matrix.create">[docs]</a><span class="k">def</span> <span class="nf">create</span><span class="p">(</span><span class="n">data</span><span class="p">):</span> - <span class="sd">"""Create matrix object with data.</span> -<span class="sd"> </span> -<span class="sd"> :param data: Data to fill the created object with.</span> -<span class="sd"> :type data: :class:`scipy.sparse.csr_matrix`</span> -<span class="sd"> :returns: :class:`int` -- the ID of the constructed object.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">m</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> - - </div> -<div class="viewcode-block" id="store"><a class="viewcode-back" href="../../matrix.html#astra.matrix.store">[docs]</a><span class="k">def</span> <span class="nf">store</span><span class="p">(</span><span class="n">i</span><span class="p">,</span><span class="n">data</span><span class="p">):</span> - <span class="sd">"""Fill existing matrix object with data.</span> -<span class="sd"> </span> -<span class="sd"> :param i: ID of object to fill.</span> -<span class="sd"> :type i: :class:`int`</span> -<span class="sd"> :param data: Data to fill the object with.</span> -<span class="sd"> :type data: :class:`scipy.sparse.csr_matrix`</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">m</span><span class="o">.</span><span class="n">store</span><span class="p">(</span><span class="n">i</span><span class="p">,</span><span class="n">data</span><span class="p">)</span> -</div> -<div class="viewcode-block" id="get_size"><a class="viewcode-back" href="../../matrix.html#astra.matrix.get_size">[docs]</a><span class="k">def</span> <span class="nf">get_size</span><span class="p">(</span><span class="n">i</span><span class="p">):</span> - <span class="sd">"""Get matrix dimensions.</span> -<span class="sd"> </span> -<span class="sd"> :param i: ID of object.</span> -<span class="sd"> :type i: :class:`int`</span> -<span class="sd"> :returns: :class:`tuple` -- matrix dimensions.</span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">m</span><span class="o">.</span><span class="n">get_size</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> - </div> -<div class="viewcode-block" id="get"><a class="viewcode-back" href="../../matrix.html#astra.matrix.get">[docs]</a><span class="k">def</span> <span class="nf">get</span><span class="p">(</span><span class="n">i</span><span class="p">):</span> - <span class="sd">"""Get a matrix object.</span> -<span class="sd"> </span> -<span class="sd"> :param i: ID of object to get.</span> -<span class="sd"> :type i: :class:`int`</span> -<span class="sd"> :returns: :class:`scipy.sparse.csr_matrix` -- The object data.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">m</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> -</div> -<div class="viewcode-block" id="info"><a class="viewcode-back" href="../../matrix.html#astra.matrix.info">[docs]</a><span class="k">def</span> <span class="nf">info</span><span class="p">():</span> - <span class="sd">"""Print info on matrix objects in memory."""</span> - <span class="k">return</span> <span class="n">m</span><span class="o">.</span><span class="n">info</span><span class="p">()</span> - - </div> -</pre></div> - - </div> - </div> - </div> - <div class="sphinxsidebar"> - <div class="sphinxsidebarwrapper"> -<div id="searchbox" style="display: none"> - <h3>Quick search</h3> - <form class="search" action="../../search.html" method="get"> - <input type="text" name="q" /> - <input type="submit" value="Go" /> - <input type="hidden" name="check_keywords" value="yes" /> - <input type="hidden" name="area" value="default" /> - </form> - <p class="searchtip" style="font-size: 90%"> - Enter search terms or a module, class or function name. - </p> -</div> -<script type="text/javascript">$('#searchbox').show(0);</script> - </div> - </div> - <div class="clearer"></div> - </div> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="../../genindex.html" title="General Index" - >index</a></li> - <li class="right" > - <a href="../../py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li><a href="../../index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - <li><a href="../index.html" >Module code</a> »</li> - </ul> - </div> - - <div class="footer"> - © Copyright 2013, Centrum Wiskunde & Informatica, Amsterdam. - Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3. - </div> -<script> - (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ - (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), - m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) - })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); - - ga('create', 'UA-40340335-1', 'dmpelt.github.io'); - ga('send', 'pageview'); - -</script> - - </body> -</html>
\ No newline at end of file diff --git a/python/docSRC/_build/html/_modules/astra/projector.html b/python/docSRC/_build/html/_modules/astra/projector.html deleted file mode 100644 index 5982b54..0000000 --- a/python/docSRC/_build/html/_modules/astra/projector.html +++ /dev/null @@ -1,205 +0,0 @@ -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" - "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> - - -<html xmlns="http://www.w3.org/1999/xhtml"> - <head> - <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> - - <title>astra.projector — PyASTRAToolbox 1.6 documentation</title> - - <link rel="stylesheet" href="../../_static/default.css" type="text/css" /> - <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" /> - - <script type="text/javascript"> - var DOCUMENTATION_OPTIONS = { - URL_ROOT: '../../', - VERSION: '1.6', - COLLAPSE_INDEX: false, - FILE_SUFFIX: '.html', - HAS_SOURCE: true - }; - </script> - <script type="text/javascript" src="../../_static/jquery.js"></script> - <script type="text/javascript" src="../../_static/underscore.js"></script> - <script type="text/javascript" src="../../_static/doctools.js"></script> - <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script> - <link rel="top" title="PyASTRAToolbox 1.6 documentation" href="../../index.html" /> - <link rel="up" title="Module code" href="../index.html" /> - </head> - <body> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="../../genindex.html" title="General Index" - accesskey="I">index</a></li> - <li class="right" > - <a href="../../py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li><a href="../../index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - <li><a href="../index.html" accesskey="U">Module code</a> »</li> - </ul> - </div> - - <div class="document"> - <div class="documentwrapper"> - <div class="bodywrapper"> - <div class="body"> - - <h1>Source code for astra.projector</h1><div class="highlight"><pre> -<span class="c">#-----------------------------------------------------------------------</span> -<span class="c">#Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam</span> -<span class="c">#</span> -<span class="c">#Author: Daniel M. Pelt</span> -<span class="c">#Contact: D.M.Pelt@cwi.nl</span> -<span class="c">#Website: http://dmpelt.github.io/pyastratoolbox/</span> -<span class="c">#</span> -<span class="c">#</span> -<span class="c">#This file is part of the Python interface to the</span> -<span class="c">#All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").</span> -<span class="c">#</span> -<span class="c">#The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify</span> -<span class="c">#it under the terms of the GNU General Public License as published by</span> -<span class="c">#the Free Software Foundation, either version 3 of the License, or</span> -<span class="c">#(at your option) any later version.</span> -<span class="c">#</span> -<span class="c">#The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful,</span> -<span class="c">#but WITHOUT ANY WARRANTY; without even the implied warranty of</span> -<span class="c">#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span> -<span class="c">#GNU General Public License for more details.</span> -<span class="c">#</span> -<span class="c">#You should have received a copy of the GNU General Public License</span> -<span class="c">#along with the Python interface to the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.</span> -<span class="c">#</span> -<span class="c">#-----------------------------------------------------------------------</span> -<span class="kn">from</span> <span class="nn">.</span> <span class="kn">import</span> <span class="n">projector_c</span> <span class="k">as</span> <span class="n">p</span> - -<div class="viewcode-block" id="create"><a class="viewcode-back" href="../../projector.html#astra.projector.create">[docs]</a><span class="k">def</span> <span class="nf">create</span><span class="p">(</span><span class="n">config</span><span class="p">):</span> - <span class="sd">"""Create projector object.</span> -<span class="sd"> </span> -<span class="sd"> :param config: Projector options.</span> -<span class="sd"> :type config: :class:`dict`</span> -<span class="sd"> :returns: :class:`int` -- the ID of the constructed object.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">p</span><span class="o">.</span><span class="n">create</span><span class="p">(</span><span class="n">config</span><span class="p">)</span> - -</div> -<div class="viewcode-block" id="delete"><a class="viewcode-back" href="../../projector.html#astra.projector.delete">[docs]</a><span class="k">def</span> <span class="nf">delete</span><span class="p">(</span><span class="n">ids</span><span class="p">):</span> - <span class="sd">"""Delete a projector object.</span> -<span class="sd"> </span> -<span class="sd"> :param ids: ID or list of ID's to delete.</span> -<span class="sd"> :type ids: :class:`int` or :class:`list`</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">p</span><span class="o">.</span><span class="n">delete</span><span class="p">(</span><span class="n">ids</span><span class="p">)</span> - -</div> -<div class="viewcode-block" id="clear"><a class="viewcode-back" href="../../projector.html#astra.projector.clear">[docs]</a><span class="k">def</span> <span class="nf">clear</span><span class="p">():</span> - <span class="sd">"""Clear all projector objects."""</span> - <span class="k">return</span> <span class="n">p</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span> - -</div> -<div class="viewcode-block" id="info"><a class="viewcode-back" href="../../projector.html#astra.projector.info">[docs]</a><span class="k">def</span> <span class="nf">info</span><span class="p">():</span> - <span class="sd">"""Print info on projector objects in memory."""</span> - <span class="k">return</span> <span class="n">p</span><span class="o">.</span><span class="n">info</span><span class="p">()</span> -</div> -<div class="viewcode-block" id="projection_geometry"><a class="viewcode-back" href="../../projector.html#astra.projector.projection_geometry">[docs]</a><span class="k">def</span> <span class="nf">projection_geometry</span><span class="p">(</span><span class="n">i</span><span class="p">):</span> - <span class="sd">"""Get projection geometry of a projector.</span> -<span class="sd"> </span> -<span class="sd"> :param i: ID of projector.</span> -<span class="sd"> :type i: :class:`int`</span> -<span class="sd"> :returns: :class:`dict` -- projection geometry</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">p</span><span class="o">.</span><span class="n">projection_geometry</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> - -</div> -<div class="viewcode-block" id="volume_geometry"><a class="viewcode-back" href="../../projector.html#astra.projector.volume_geometry">[docs]</a><span class="k">def</span> <span class="nf">volume_geometry</span><span class="p">(</span><span class="n">i</span><span class="p">):</span> - <span class="sd">"""Get volume geometry of a projector.</span> -<span class="sd"> </span> -<span class="sd"> :param i: ID of projector.</span> -<span class="sd"> :type i: :class:`int`</span> -<span class="sd"> :returns: :class:`dict` -- volume geometry</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">p</span><span class="o">.</span><span class="n">volume_geometry</span><span class="p">(</span><span class="n">i</span><span class="p">)</span> - -</div> -<div class="viewcode-block" id="weights_single_ray"><a class="viewcode-back" href="../../projector.html#astra.projector.weights_single_ray">[docs]</a><span class="k">def</span> <span class="nf">weights_single_ray</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">projection_index</span><span class="p">,</span> <span class="n">detector_index</span><span class="p">):</span> - <span class="k">return</span> <span class="n">p</span><span class="o">.</span><span class="n">weights_single_ray</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">projection_index</span><span class="p">,</span> <span class="n">detector_index</span><span class="p">)</span> - -</div> -<div class="viewcode-block" id="weights_projection"><a class="viewcode-back" href="../../projector.html#astra.projector.weights_projection">[docs]</a><span class="k">def</span> <span class="nf">weights_projection</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">projection_index</span><span class="p">):</span> - <span class="k">return</span> <span class="n">p</span><span class="o">.</span><span class="n">weights_projection</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">projection_index</span><span class="p">)</span> - -</div> -<div class="viewcode-block" id="splat"><a class="viewcode-back" href="../../projector.html#astra.projector.splat">[docs]</a><span class="k">def</span> <span class="nf">splat</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">row</span><span class="p">,</span> <span class="n">col</span><span class="p">):</span> - <span class="k">return</span> <span class="n">p</span><span class="o">.</span><span class="n">splat</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">row</span><span class="p">,</span> <span class="n">col</span><span class="p">)</span> - -</div> -<div class="viewcode-block" id="matrix"><a class="viewcode-back" href="../../projector.html#astra.projector.matrix">[docs]</a><span class="k">def</span> <span class="nf">matrix</span><span class="p">(</span><span class="n">i</span><span class="p">):</span> - <span class="sd">"""Get sparse matrix of a projector.</span> -<span class="sd"> </span> -<span class="sd"> :param i: ID of projector.</span> -<span class="sd"> :type i: :class:`int`</span> -<span class="sd"> :returns: :class:`int` -- ID of sparse matrix.</span> -<span class="sd"> </span> -<span class="sd"> """</span> - <span class="k">return</span> <span class="n">p</span><span class="o">.</span><span class="n">matrix</span><span class="p">(</span><span class="n">i</span><span class="p">)</span></div> -</pre></div> - - </div> - </div> - </div> - <div class="sphinxsidebar"> - <div class="sphinxsidebarwrapper"> -<div id="searchbox" style="display: none"> - <h3>Quick search</h3> - <form class="search" action="../../search.html" method="get"> - <input type="text" name="q" /> - <input type="submit" value="Go" /> - <input type="hidden" name="check_keywords" value="yes" /> - <input type="hidden" name="area" value="default" /> - </form> - <p class="searchtip" style="font-size: 90%"> - Enter search terms or a module, class or function name. - </p> -</div> -<script type="text/javascript">$('#searchbox').show(0);</script> - </div> - </div> - <div class="clearer"></div> - </div> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="../../genindex.html" title="General Index" - >index</a></li> - <li class="right" > - <a href="../../py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li><a href="../../index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - <li><a href="../index.html" >Module code</a> »</li> - </ul> - </div> - - <div class="footer"> - © Copyright 2013, Centrum Wiskunde & Informatica, Amsterdam. - Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3. - </div> -<script> - (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ - (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), - m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) - })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); - 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\ No newline at end of file diff --git a/python/docSRC/_build/html/_modules/index.html b/python/docSRC/_build/html/_modules/index.html deleted file mode 100644 index a844d93..0000000 --- a/python/docSRC/_build/html/_modules/index.html +++ /dev/null @@ -1,112 +0,0 @@ -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" - "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> - - -<html xmlns="http://www.w3.org/1999/xhtml"> - <head> - <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> - - <title>Overview: module code — PyASTRAToolbox 1.6 documentation</title> - - <link rel="stylesheet" href="../_static/default.css" type="text/css" /> - <link rel="stylesheet" href="../_static/pygments.css" type="text/css" /> - - <script type="text/javascript"> - var DOCUMENTATION_OPTIONS = { - URL_ROOT: '../', - VERSION: '1.6', - COLLAPSE_INDEX: false, - FILE_SUFFIX: '.html', - HAS_SOURCE: true - }; - </script> - <script type="text/javascript" src="../_static/jquery.js"></script> - <script type="text/javascript" src="../_static/underscore.js"></script> - <script type="text/javascript" src="../_static/doctools.js"></script> - <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script> - <link rel="top" title="PyASTRAToolbox 1.6 documentation" href="../index.html" /> - </head> - <body> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="../genindex.html" title="General Index" - accesskey="I">index</a></li> - <li class="right" > - <a href="../py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li><a href="../index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - </ul> - </div> - - <div class="document"> - <div class="documentwrapper"> - <div class="bodywrapper"> - <div class="body"> - - <h1>All modules for which code is available</h1> -<ul><li><a href="astra/ASTRAProjector.html">astra.ASTRAProjector</a></li> -<li><a href="astra/algorithm.html">astra.algorithm</a></li> -<li><a href="astra/astra.html">astra.astra</a></li> -<li><a href="astra/creators.html">astra.creators</a></li> -<li><a href="astra/data2d.html">astra.data2d</a></li> -<li><a href="astra/data3d.html">astra.data3d</a></li> -<li><a href="astra/functions.html">astra.functions</a></li> -<li><a href="astra/matlab.html">astra.matlab</a></li> -<li><a href="astra/matrix.html">astra.matrix</a></li> -<li><a href="astra/projector.html">astra.projector</a></li> -</ul> - - </div> - </div> - </div> - <div class="sphinxsidebar"> - <div class="sphinxsidebarwrapper"> -<div id="searchbox" style="display: none"> - <h3>Quick search</h3> - <form class="search" action="../search.html" method="get"> - <input type="text" name="q" /> - <input type="submit" value="Go" /> - <input type="hidden" name="check_keywords" value="yes" /> - <input type="hidden" name="area" value="default" /> - </form> - <p class="searchtip" style="font-size: 90%"> - Enter search terms or a module, class or function name. - </p> -</div> -<script type="text/javascript">$('#searchbox').show(0);</script> - </div> - </div> - <div class="clearer"></div> - </div> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="../genindex.html" title="General Index" - >index</a></li> - <li class="right" > - <a href="../py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li><a href="../index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - </ul> - </div> - - <div class="footer"> - © Copyright 2013, Centrum Wiskunde & Informatica, Amsterdam. - Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3. - </div> -<script> - (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ - (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), - m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) - })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); - - ga('create', 'UA-40340335-1', 'dmpelt.github.io'); - ga('send', 'pageview'); - -</script> - - </body> -</html>
\ No newline at end of file diff --git a/python/docSRC/_build/html/_sources/ASTRAProjector.txt b/python/docSRC/_build/html/_sources/ASTRAProjector.txt deleted file mode 100644 index 1c267e3..0000000 --- a/python/docSRC/_build/html/_sources/ASTRAProjector.txt +++ /dev/null @@ -1,8 +0,0 @@ -Helper class: the :mod:`ASTRAProjector` module -============================================== - -.. automodule:: astra.ASTRAProjector - :members: - :undoc-members: - :show-inheritance: - diff --git a/python/docSRC/_build/html/_sources/algorithm.txt b/python/docSRC/_build/html/_sources/algorithm.txt deleted file mode 100644 index 83752bd..0000000 --- a/python/docSRC/_build/html/_sources/algorithm.txt +++ /dev/null @@ -1,8 +0,0 @@ -Algorithms: the :mod:`algorithm` module -======================================= - -.. automodule:: astra.algorithm - :members: - :undoc-members: - :show-inheritance: - diff --git a/python/docSRC/_build/html/_sources/astra.txt b/python/docSRC/_build/html/_sources/astra.txt deleted file mode 100644 index 5d5fdf0..0000000 --- a/python/docSRC/_build/html/_sources/astra.txt +++ /dev/null @@ -1,8 +0,0 @@ -Additional ASTRA methods: the :mod:`astra` module -======================================================== - -.. automodule:: astra.astra - :members: - :undoc-members: - :show-inheritance: - diff --git a/python/docSRC/_build/html/_sources/creators.txt b/python/docSRC/_build/html/_sources/creators.txt deleted file mode 100644 index d6249c3..0000000 --- a/python/docSRC/_build/html/_sources/creators.txt +++ /dev/null @@ -1,8 +0,0 @@ -Creation of objects: the :mod:`creators` module -=============================================== - -.. automodule:: astra.creators - :members: - :undoc-members: - :show-inheritance: - diff --git a/python/docSRC/_build/html/_sources/data2d.txt b/python/docSRC/_build/html/_sources/data2d.txt deleted file mode 100644 index 342cbec..0000000 --- a/python/docSRC/_build/html/_sources/data2d.txt +++ /dev/null @@ -1,8 +0,0 @@ -2D data objects: the :mod:`data2d` module -========================================= - -.. automodule:: astra.data2d - :members: - :undoc-members: - :show-inheritance: - diff --git a/python/docSRC/_build/html/_sources/data3d.txt b/python/docSRC/_build/html/_sources/data3d.txt deleted file mode 100644 index 5b7de23..0000000 --- a/python/docSRC/_build/html/_sources/data3d.txt +++ /dev/null @@ -1,8 +0,0 @@ -3D data objects: the :mod:`data3d` module -========================================= - -.. automodule:: astra.data3d - :members: - :undoc-members: - :show-inheritance: - diff --git a/python/docSRC/_build/html/_sources/functions.txt b/python/docSRC/_build/html/_sources/functions.txt deleted file mode 100644 index 749eb27..0000000 --- a/python/docSRC/_build/html/_sources/functions.txt +++ /dev/null @@ -1,8 +0,0 @@ -Additional functions: the :mod:`functions` module -================================================= - -.. automodule:: astra.functions - :members: - :undoc-members: - :show-inheritance: - diff --git a/python/docSRC/_build/html/_sources/index.txt b/python/docSRC/_build/html/_sources/index.txt deleted file mode 100644 index 8d17a4a..0000000 --- a/python/docSRC/_build/html/_sources/index.txt +++ /dev/null @@ -1,34 +0,0 @@ -.. .. documentation master file, created by - sphinx-quickstart on Wed Mar 13 16:36:32 2013. - You can adapt this file completely to your liking, but it should at least - contain the root `toctree` directive. - -Welcome to PyASTRAToolbox's documentation! -========================================== - -Contents: - -.. toctree:: - :maxdepth: 4 - - data2d - data3d - projector - algorithm - matrix - creators - functions - ASTRAProjector - matlab - astra -.. astra -.. builder - - -Indices and tables -================== - -* :ref:`genindex` -* :ref:`modindex` -* :ref:`search` - diff --git a/python/docSRC/_build/html/_sources/matlab.txt b/python/docSRC/_build/html/_sources/matlab.txt deleted file mode 100644 index fb7033e..0000000 --- a/python/docSRC/_build/html/_sources/matlab.txt +++ /dev/null @@ -1,8 +0,0 @@ -MATLAB compatibility interface: the :mod:`matlab` module -======================================================== - -.. automodule:: astra.matlab - :members: - :undoc-members: - :show-inheritance: - diff --git a/python/docSRC/_build/html/_sources/matrix.txt b/python/docSRC/_build/html/_sources/matrix.txt deleted file mode 100644 index 6f11d8a..0000000 --- a/python/docSRC/_build/html/_sources/matrix.txt +++ /dev/null @@ -1,8 +0,0 @@ -Sparse matrices: the :mod:`matrix` module -========================================= - -.. automodule:: astra.matrix - :members: - :undoc-members: - :show-inheritance: - diff --git a/python/docSRC/_build/html/_sources/projector.txt b/python/docSRC/_build/html/_sources/projector.txt deleted file mode 100644 index b0854e8..0000000 --- a/python/docSRC/_build/html/_sources/projector.txt +++ /dev/null @@ -1,8 +0,0 @@ -Projector object: the :mod:`projector` module -============================================= - -.. automodule:: astra.projector - :members: - :undoc-members: - :show-inheritance: - diff --git a/python/docSRC/_build/html/_static/ajax-loader.gif b/python/docSRC/_build/html/_static/ajax-loader.gif Binary files differdeleted file mode 100644 index 61faf8c..0000000 --- a/python/docSRC/_build/html/_static/ajax-loader.gif +++ /dev/null diff --git a/python/docSRC/_build/html/_static/basic.css b/python/docSRC/_build/html/_static/basic.css deleted file mode 100644 index 967e36c..0000000 --- a/python/docSRC/_build/html/_static/basic.css +++ /dev/null @@ -1,537 +0,0 @@ -/* - * basic.css - * ~~~~~~~~~ - * - * Sphinx stylesheet -- basic theme. - * - * :copyright: Copyright 2007-2014 by the Sphinx team, see AUTHORS. - * :license: BSD, see LICENSE for details. - * - */ - -/* -- main layout ----------------------------------------------------------- */ - -div.clearer { - clear: both; -} - -/* -- relbar ---------------------------------------------------------------- */ - -div.related { - width: 100%; - font-size: 90%; -} - -div.related h3 { - display: none; -} - -div.related ul { - margin: 0; - padding: 0 0 0 10px; - list-style: none; -} - -div.related li { - display: inline; -} - -div.related li.right { - float: right; - margin-right: 5px; -} - -/* -- sidebar --------------------------------------------------------------- */ - -div.sphinxsidebarwrapper { - padding: 10px 5px 0 10px; -} - -div.sphinxsidebar { - float: left; - width: 230px; - margin-left: -100%; - font-size: 90%; -} - -div.sphinxsidebar ul { - list-style: none; -} - -div.sphinxsidebar ul ul, -div.sphinxsidebar ul.want-points { - margin-left: 20px; - list-style: square; -} - -div.sphinxsidebar ul ul { - margin-top: 0; - margin-bottom: 0; -} - -div.sphinxsidebar form { - margin-top: 10px; -} - -div.sphinxsidebar input { - border: 1px solid #98dbcc; - font-family: sans-serif; - font-size: 1em; -} - -div.sphinxsidebar #searchbox input[type="text"] { - width: 170px; -} - -div.sphinxsidebar #searchbox input[type="submit"] { - width: 30px; -} - -img { - border: 0; - max-width: 100%; -} - -/* -- search page ----------------------------------------------------------- */ - -ul.search { - margin: 10px 0 0 20px; - padding: 0; -} - -ul.search li { - padding: 5px 0 5px 20px; - background-image: url(file.png); - background-repeat: no-repeat; - background-position: 0 7px; -} - -ul.search li a { - font-weight: bold; -} - -ul.search li div.context { - color: #888; - margin: 2px 0 0 30px; - text-align: left; -} - -ul.keywordmatches li.goodmatch a { - font-weight: bold; -} - -/* -- index page ------------------------------------------------------------ */ - 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- - var c = "[^aeiou]"; // consonant - var v = "[aeiouy]"; // vowel - var C = c + "[^aeiouy]*"; // consonant sequence - var V = v + "[aeiou]*"; // vowel sequence - - var mgr0 = "^(" + C + ")?" + V + C; // [C]VC... is m>0 - var meq1 = "^(" + C + ")?" + V + C + "(" + V + ")?$"; // [C]VC[V] is m=1 - var mgr1 = "^(" + C + ")?" + V + C + V + C; // [C]VCVC... is m>1 - var s_v = "^(" + C + ")?" + v; // vowel in stem - - this.stemWord = function (w) { - var stem; - var suffix; - var firstch; - var origword = w; - - if (w.length < 3) - return w; - - var re; - var re2; - var re3; - var re4; - - firstch = w.substr(0,1); - if (firstch == "y") - w = firstch.toUpperCase() + w.substr(1); - - // Step 1a - re = /^(.+?)(ss|i)es$/; - re2 = /^(.+?)([^s])s$/; - - if (re.test(w)) - w = w.replace(re,"$1$2"); - else if (re2.test(w)) - w = w.replace(re2,"$1$2"); - - // Step 1b - re = /^(.+?)eed$/; - re2 = /^(.+?)(ed|ing)$/; - if (re.test(w)) { - var fp = re.exec(w); - re = new RegExp(mgr0); - if (re.test(fp[1])) { - re = /.$/; - w = w.replace(re,""); - } - } - else if (re2.test(w)) { - var fp = re2.exec(w); - stem = fp[1]; - re2 = new RegExp(s_v); - if (re2.test(stem)) { - w = stem; - re2 = /(at|bl|iz)$/; - re3 = new RegExp("([^aeiouylsz])\\1$"); - re4 = new RegExp("^" + C + v + "[^aeiouwxy]$"); - if (re2.test(w)) - w = w + "e"; - else if (re3.test(w)) { - re = /.$/; - w = w.replace(re,""); - } - else if (re4.test(w)) - w = w + "e"; - } - } - - // Step 1c - re = /^(.+?)y$/; - if (re.test(w)) { - var fp = re.exec(w); - stem = fp[1]; - re = new RegExp(s_v); - if (re.test(stem)) - w = stem + "i"; - } - - // Step 2 - re = /^(.+?)(ational|tional|enci|anci|izer|bli|alli|entli|eli|ousli|ization|ation|ator|alism|iveness|fulness|ousness|aliti|iviti|biliti|logi)$/; - if (re.test(w)) { - var fp = re.exec(w); - stem = fp[1]; - suffix = fp[2]; - re = new RegExp(mgr0); - if (re.test(stem)) - w = stem + step2list[suffix]; - } - - // Step 3 - re = /^(.+?)(icate|ative|alize|iciti|ical|ful|ness)$/; - if (re.test(w)) { - var fp = re.exec(w); - stem = fp[1]; - suffix = fp[2]; - re = new RegExp(mgr0); - if (re.test(stem)) - w = stem + step3list[suffix]; - } - - // Step 4 - re = /^(.+?)(al|ance|ence|er|ic|able|ible|ant|ement|ment|ent|ou|ism|ate|iti|ous|ive|ize)$/; - re2 = /^(.+?)(s|t)(ion)$/; - if (re.test(w)) { - var fp = re.exec(w); - stem = fp[1]; - re = new RegExp(mgr1); - if (re.test(stem)) - w = stem; - } - else if (re2.test(w)) { - var fp = re2.exec(w); - stem = fp[1] + fp[2]; - re2 = new RegExp(mgr1); - if (re2.test(stem)) - w = stem; - } - - // Step 5 - re = /^(.+?)e$/; - if (re.test(w)) { - var fp = re.exec(w); - stem = fp[1]; - re = new RegExp(mgr1); - re2 = new RegExp(meq1); - re3 = new RegExp("^" + C + v + "[^aeiouwxy]$"); - if (re.test(stem) || (re2.test(stem) && !(re3.test(stem)))) - w = stem; - } - re = /ll$/; - re2 = new RegExp(mgr1); - if (re.test(w) && re2.test(w)) { - re = /.$/; - w = w.replace(re,""); - } - - // and turn initial Y back to y - if (firstch == "y") - w = firstch.toLowerCase() + w.substr(1); - return w; - } -} - - - -/** - * Simple result scoring code. - */ -var Scorer = { - // Implement the following function to further tweak the score for each result - // The function takes a result array [filename, title, anchor, descr, score] - // and returns the new score. - /* - score: function(result) { - return result[4]; - }, - */ - - // query matches the full name of an object - objNameMatch: 11, - // or matches in the last dotted part of the object name - objPartialMatch: 6, - // Additive scores depending on the priority of the object - objPrio: {0: 15, // used to be importantResults - 1: 5, // used to be objectResults - 2: -5}, // used to be unimportantResults - // Used when the priority is not in the mapping. - objPrioDefault: 0, - - // query found in title - title: 15, - // query found in terms - term: 5 -}; - - -/** - * Search Module - */ -var Search = { - - _index : null, - _queued_query : null, - _pulse_status : -1, - - init : function() { - var params = $.getQueryParameters(); - if (params.q) { - var query = params.q[0]; - $('input[name="q"]')[0].value = query; - this.performSearch(query); - } - }, - - loadIndex : function(url) { - $.ajax({type: "GET", url: url, data: null, - dataType: "script", cache: true, - complete: function(jqxhr, textstatus) { - if (textstatus != "success") { - document.getElementById("searchindexloader").src = url; - } - }}); - }, - - setIndex : function(index) { - var q; - this._index = index; - if ((q = this._queued_query) !== null) { - this._queued_query = null; - Search.query(q); - } - }, - - hasIndex : function() { - return this._index !== null; - }, - - deferQuery : function(query) { - this._queued_query = query; - }, - - stopPulse : function() { - this._pulse_status = 0; - }, - - startPulse : function() { - if (this._pulse_status >= 0) - return; - function pulse() { - var i; - Search._pulse_status = (Search._pulse_status + 1) % 4; - var dotString = ''; - for (i = 0; i < Search._pulse_status; i++) - dotString += '.'; - Search.dots.text(dotString); - if (Search._pulse_status > -1) - window.setTimeout(pulse, 500); - } - pulse(); - }, - - /** - * perform a search for something (or wait until index is loaded) - */ - performSearch : function(query) { - // create the required interface elements - this.out = $('#search-results'); - this.title = $('<h2>' + _('Searching') + '</h2>').appendTo(this.out); - this.dots = $('<span></span>').appendTo(this.title); - this.status = $('<p style="display: none"></p>').appendTo(this.out); - this.output = $('<ul class="search"/>').appendTo(this.out); - - $('#search-progress').text(_('Preparing search...')); - this.startPulse(); - - // index already loaded, the browser was quick! - if (this.hasIndex()) - this.query(query); - else - this.deferQuery(query); - }, - - /** - * execute search (requires search index to be loaded) - */ - query : function(query) { - var i; - var stopwords = ["a","and","are","as","at","be","but","by","for","if","in","into","is","it","near","no","not","of","on","or","such","that","the","their","then","there","these","they","this","to","was","will","with"]; - - // stem the searchterms and add them to the correct list - var stemmer = new Stemmer(); - var searchterms = []; - var excluded = []; - var hlterms = []; - var tmp = query.split(/\s+/); - var objectterms = []; - for (i = 0; i < tmp.length; i++) { - if (tmp[i] !== "") { - objectterms.push(tmp[i].toLowerCase()); - } - - if ($u.indexOf(stopwords, tmp[i].toLowerCase()) != -1 || tmp[i].match(/^\d+$/) || - tmp[i] === "") { - // skip this "word" - continue; - } - // stem the word - var word = stemmer.stemWord(tmp[i].toLowerCase()); - var toAppend; - // select the correct list - if (word[0] == '-') { - toAppend = excluded; - word = word.substr(1); - } - else { - toAppend = searchterms; - hlterms.push(tmp[i].toLowerCase()); - } - // only add if not already in the list - if (!$u.contains(toAppend, word)) - toAppend.push(word); - } - var highlightstring = '?highlight=' + $.urlencode(hlterms.join(" ")); - - // console.debug('SEARCH: searching for:'); - // console.info('required: ', searchterms); - // console.info('excluded: ', excluded); - - // prepare search - var terms = this._index.terms; - var titleterms = this._index.titleterms; - - // array of [filename, title, anchor, descr, score] - var results = []; - $('#search-progress').empty(); - - // lookup as object - for (i = 0; i < objectterms.length; i++) { - var others = [].concat(objectterms.slice(0, i), - objectterms.slice(i+1, objectterms.length)); - results = results.concat(this.performObjectSearch(objectterms[i], others)); - } - - // lookup as search terms in fulltext - results = results.concat(this.performTermsSearch(searchterms, excluded, terms, Scorer.term)) - .concat(this.performTermsSearch(searchterms, excluded, titleterms, Scorer.title)); - - // let the scorer override scores with a custom scoring function - if (Scorer.score) { - for (i = 0; i < results.length; i++) - results[i][4] = Scorer.score(results[i]); - } - - // now sort the results by score (in opposite order of appearance, since the - // display function below uses pop() to retrieve items) and then - // alphabetically - results.sort(function(a, b) { - var left = a[4]; - var right = b[4]; - if (left > right) { - return 1; - } else if (left < right) { - return -1; - } else { - // same score: sort alphabetically - left = a[1].toLowerCase(); - right = b[1].toLowerCase(); - return (left > right) ? -1 : ((left < right) ? 1 : 0); - } - }); - - // for debugging - //Search.lastresults = results.slice(); // a copy - //console.info('search results:', Search.lastresults); - - // print the results - var resultCount = results.length; - function displayNextItem() { - // results left, load the summary and display it - if (results.length) { - var item = results.pop(); - var listItem = $('<li style="display:none"></li>'); - if (DOCUMENTATION_OPTIONS.FILE_SUFFIX === '') { - // dirhtml builder - var dirname = item[0] + '/'; - if (dirname.match(/\/index\/$/)) { - dirname = dirname.substring(0, dirname.length-6); - } else if (dirname == 'index/') { - dirname = ''; - } - listItem.append($('<a/>').attr('href', - DOCUMENTATION_OPTIONS.URL_ROOT + dirname + - highlightstring + item[2]).html(item[1])); - } else { - // normal html builders - listItem.append($('<a/>').attr('href', - item[0] + DOCUMENTATION_OPTIONS.FILE_SUFFIX + - highlightstring + item[2]).html(item[1])); - } - if (item[3]) { - listItem.append($('<span> (' + item[3] + ')</span>')); - Search.output.append(listItem); - listItem.slideDown(5, function() { - displayNextItem(); - }); - } else if (DOCUMENTATION_OPTIONS.HAS_SOURCE) { - $.ajax({url: DOCUMENTATION_OPTIONS.URL_ROOT + '_sources/' + item[0] + '.txt', - dataType: "text", - complete: function(jqxhr, textstatus) { - var data = jqxhr.responseText; - if (data !== '') { - listItem.append(Search.makeSearchSummary(data, searchterms, hlterms)); - } - Search.output.append(listItem); - listItem.slideDown(5, function() { - displayNextItem(); - }); - }}); - } else { - // no source available, just display title - Search.output.append(listItem); - listItem.slideDown(5, function() { - displayNextItem(); - }); - } - } - // search finished, update title and status message - else { - Search.stopPulse(); - Search.title.text(_('Search Results')); - if (!resultCount) - Search.status.text(_('Your search did not match any documents. 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diff --git a/python/docSRC/_build/html/_static/up-pressed.png b/python/docSRC/_build/html/_static/up-pressed.png Binary files differdeleted file mode 100644 index 8bd587a..0000000 --- a/python/docSRC/_build/html/_static/up-pressed.png +++ /dev/null diff --git a/python/docSRC/_build/html/_static/up.png b/python/docSRC/_build/html/_static/up.png Binary files differdeleted file mode 100644 index b946256..0000000 --- a/python/docSRC/_build/html/_static/up.png +++ /dev/null diff --git a/python/docSRC/_build/html/_static/websupport.js b/python/docSRC/_build/html/_static/websupport.js deleted file mode 100644 index 71c0a13..0000000 --- a/python/docSRC/_build/html/_static/websupport.js +++ /dev/null @@ -1,808 +0,0 @@ -/* - * websupport.js - * ~~~~~~~~~~~~~ - * - * sphinx.websupport utilties for all documentation. - * - * :copyright: Copyright 2007-2014 by the Sphinx team, see AUTHORS. - * :license: BSD, see LICENSE for details. - * - */ - -(function($) { - $.fn.autogrow = function() { - return this.each(function() { - var textarea = this; - - $.fn.autogrow.resize(textarea); - - $(textarea) - .focus(function() { - textarea.interval = setInterval(function() { - $.fn.autogrow.resize(textarea); - }, 500); - }) - .blur(function() { - clearInterval(textarea.interval); - }); - }); - }; - - $.fn.autogrow.resize = function(textarea) { - var lineHeight = parseInt($(textarea).css('line-height'), 10); - var lines = textarea.value.split('\n'); - var columns = textarea.cols; - var lineCount = 0; - $.each(lines, function() { - lineCount += Math.ceil(this.length / columns) || 1; - }); - var height = lineHeight * (lineCount + 1); - $(textarea).css('height', height); - }; -})(jQuery); - -(function($) { - var comp, by; - - function init() { - initEvents(); - initComparator(); - } - - function initEvents() { - $('a.comment-close').live("click", function(event) { - event.preventDefault(); - hide($(this).attr('id').substring(2)); - }); - $('a.vote').live("click", function(event) { - event.preventDefault(); - handleVote($(this)); - }); - $('a.reply').live("click", function(event) { - event.preventDefault(); - openReply($(this).attr('id').substring(2)); - }); - $('a.close-reply').live("click", function(event) { - event.preventDefault(); - closeReply($(this).attr('id').substring(2)); - }); - $('a.sort-option').live("click", function(event) { - event.preventDefault(); - handleReSort($(this)); - }); - $('a.show-proposal').live("click", function(event) { - event.preventDefault(); - showProposal($(this).attr('id').substring(2)); - }); - $('a.hide-proposal').live("click", function(event) { - event.preventDefault(); - hideProposal($(this).attr('id').substring(2)); - }); - $('a.show-propose-change').live("click", function(event) { - event.preventDefault(); - showProposeChange($(this).attr('id').substring(2)); - }); - $('a.hide-propose-change').live("click", function(event) { - event.preventDefault(); - hideProposeChange($(this).attr('id').substring(2)); - }); - $('a.accept-comment').live("click", function(event) { - event.preventDefault(); - acceptComment($(this).attr('id').substring(2)); - }); - $('a.delete-comment').live("click", function(event) { - event.preventDefault(); - deleteComment($(this).attr('id').substring(2)); - }); - $('a.comment-markup').live("click", function(event) { - event.preventDefault(); - toggleCommentMarkupBox($(this).attr('id').substring(2)); - }); - } - - /** - * Set comp, which is a comparator function used for sorting and - * inserting comments into the list. - */ - function setComparator() { - // If the first three letters are "asc", sort in ascending order - // and remove the prefix. - if (by.substring(0,3) == 'asc') { - var i = by.substring(3); - comp = function(a, b) { return a[i] - b[i]; }; - } else { - // Otherwise sort in descending order. - comp = function(a, b) { return b[by] - a[by]; }; - } - - // Reset link styles and format the selected sort option. - $('a.sel').attr('href', '#').removeClass('sel'); - $('a.by' + by).removeAttr('href').addClass('sel'); - } - - /** - * Create a comp function. If the user has preferences stored in - * the sortBy cookie, use those, otherwise use the default. - */ - function initComparator() { - by = 'rating'; // Default to sort by rating. - // If the sortBy cookie is set, use that instead. - if (document.cookie.length > 0) { - var start = document.cookie.indexOf('sortBy='); - if (start != -1) { - start = start + 7; - var end = document.cookie.indexOf(";", start); - if (end == -1) { - end = document.cookie.length; - by = unescape(document.cookie.substring(start, end)); - } - } - } - setComparator(); - } - - /** - * Show a comment div. - */ - function show(id) { - $('#ao' + id).hide(); - $('#ah' + id).show(); - var context = $.extend({id: id}, opts); - var popup = $(renderTemplate(popupTemplate, context)).hide(); - popup.find('textarea[name="proposal"]').hide(); - popup.find('a.by' + by).addClass('sel'); - var form = popup.find('#cf' + id); - form.submit(function(event) { - event.preventDefault(); - addComment(form); - }); - $('#s' + id).after(popup); - popup.slideDown('fast', function() { - getComments(id); - }); - } - - /** - * Hide a comment div. - */ - function hide(id) { - $('#ah' + id).hide(); - $('#ao' + id).show(); - var div = $('#sc' + id); - div.slideUp('fast', function() { - div.remove(); - }); - } - - /** - * Perform an ajax request to get comments for a node - * and insert the comments into the comments tree. - */ - function getComments(id) { - $.ajax({ - type: 'GET', - url: opts.getCommentsURL, - data: {node: id}, - success: function(data, textStatus, request) { - var ul = $('#cl' + id); - var speed = 100; - $('#cf' + id) - .find('textarea[name="proposal"]') - .data('source', data.source); - - if (data.comments.length === 0) { - ul.html('<li>No comments yet.</li>'); - ul.data('empty', true); - } else { - // If there are comments, sort them and put them in the list. - var comments = sortComments(data.comments); - speed = data.comments.length * 100; - appendComments(comments, ul); - ul.data('empty', false); - } - $('#cn' + id).slideUp(speed + 200); - ul.slideDown(speed); - }, - error: function(request, textStatus, error) { - showError('Oops, there was a problem retrieving the comments.'); - }, - dataType: 'json' - }); - } - - /** - * Add a comment via ajax and insert the comment into the comment tree. - */ - function addComment(form) { - var node_id = form.find('input[name="node"]').val(); - var parent_id = form.find('input[name="parent"]').val(); - var text = form.find('textarea[name="comment"]').val(); - var proposal = form.find('textarea[name="proposal"]').val(); - - if (text == '') { - showError('Please enter a comment.'); - return; - } - - // Disable the form that is being submitted. - form.find('textarea,input').attr('disabled', 'disabled'); - - // Send the comment to the server. - $.ajax({ - type: "POST", - url: opts.addCommentURL, - dataType: 'json', - data: { - node: node_id, - parent: parent_id, - text: text, - proposal: proposal - }, - success: function(data, textStatus, error) { - // Reset the form. - if (node_id) { - hideProposeChange(node_id); - } - form.find('textarea') - .val('') - .add(form.find('input')) - .removeAttr('disabled'); - var ul = $('#cl' + (node_id || parent_id)); - if (ul.data('empty')) { - $(ul).empty(); - ul.data('empty', false); - } - insertComment(data.comment); - var ao = $('#ao' + node_id); - ao.find('img').attr({'src': opts.commentBrightImage}); - if (node_id) { - // if this was a "root" comment, remove the commenting box - // (the user can get it back by reopening the comment popup) - $('#ca' + node_id).slideUp(); - } - }, - error: function(request, textStatus, error) { - form.find('textarea,input').removeAttr('disabled'); - showError('Oops, there was a problem adding the comment.'); - } - }); - } - - /** - * Recursively append comments to the main comment list and children - * lists, creating the comment tree. - */ - function appendComments(comments, ul) { - $.each(comments, function() { - var div = createCommentDiv(this); - ul.append($(document.createElement('li')).html(div)); - appendComments(this.children, div.find('ul.comment-children')); - // To avoid stagnating data, don't store the comments children in data. - this.children = null; - div.data('comment', this); - }); - } - - /** - * After adding a new comment, it must be inserted in the correct - * location in the comment tree. - */ - function insertComment(comment) { - var div = createCommentDiv(comment); - - // To avoid stagnating data, don't store the comments children in data. - comment.children = null; - div.data('comment', comment); - - var ul = $('#cl' + (comment.node || comment.parent)); - var siblings = getChildren(ul); - - var li = $(document.createElement('li')); - li.hide(); - - // Determine where in the parents children list to insert this comment. - for(i=0; i < siblings.length; i++) { - if (comp(comment, siblings[i]) <= 0) { - $('#cd' + siblings[i].id) - .parent() - .before(li.html(div)); - li.slideDown('fast'); - return; - } - } - - // If we get here, this comment rates lower than all the others, - // or it is the only comment in the list. - ul.append(li.html(div)); - li.slideDown('fast'); - } - - function acceptComment(id) { - $.ajax({ - type: 'POST', - url: opts.acceptCommentURL, - data: {id: id}, - success: function(data, textStatus, request) { - $('#cm' + id).fadeOut('fast'); - $('#cd' + id).removeClass('moderate'); - }, - error: function(request, textStatus, error) { - showError('Oops, there was a problem accepting the comment.'); - } - }); - } - - function deleteComment(id) { - $.ajax({ - type: 'POST', - url: opts.deleteCommentURL, - data: {id: id}, - success: function(data, textStatus, request) { - var div = $('#cd' + id); - if (data == 'delete') { - // Moderator mode: remove the comment and all children immediately - div.slideUp('fast', function() { - div.remove(); - }); - return; - } - // User mode: only mark the comment as deleted - div - .find('span.user-id:first') - .text('[deleted]').end() - .find('div.comment-text:first') - .text('[deleted]').end() - .find('#cm' + id + ', #dc' + id + ', #ac' + id + ', #rc' + id + - ', #sp' + id + ', #hp' + id + ', #cr' + id + ', #rl' + id) - .remove(); - var comment = div.data('comment'); - comment.username = '[deleted]'; - comment.text = '[deleted]'; - div.data('comment', comment); - }, - error: function(request, textStatus, error) { - showError('Oops, there was a problem deleting the comment.'); - } - }); - } - - function showProposal(id) { - $('#sp' + id).hide(); - $('#hp' + id).show(); - $('#pr' + id).slideDown('fast'); - } - - function hideProposal(id) { - $('#hp' + id).hide(); - $('#sp' + id).show(); - $('#pr' + id).slideUp('fast'); - } - - function showProposeChange(id) { - $('#pc' + id).hide(); - $('#hc' + id).show(); - var textarea = $('#pt' + id); - textarea.val(textarea.data('source')); - $.fn.autogrow.resize(textarea[0]); - textarea.slideDown('fast'); - } - - function hideProposeChange(id) { - $('#hc' + id).hide(); - $('#pc' + id).show(); - var textarea = $('#pt' + id); - textarea.val('').removeAttr('disabled'); - textarea.slideUp('fast'); - } - - function toggleCommentMarkupBox(id) { - $('#mb' + id).toggle(); - } - - /** Handle when the user clicks on a sort by link. */ - function handleReSort(link) { - var classes = link.attr('class').split(/\s+/); - for (var i=0; i<classes.length; i++) { - if (classes[i] != 'sort-option') { - by = classes[i].substring(2); - } - } - setComparator(); - // Save/update the sortBy cookie. - var expiration = new Date(); - expiration.setDate(expiration.getDate() + 365); - document.cookie= 'sortBy=' + escape(by) + - ';expires=' + expiration.toUTCString(); - $('ul.comment-ul').each(function(index, ul) { - var comments = getChildren($(ul), true); - comments = sortComments(comments); - appendComments(comments, $(ul).empty()); - }); - } - - /** - * Function to process a vote when a user clicks an arrow. - */ - function handleVote(link) { - if (!opts.voting) { - showError("You'll need to login to vote."); - return; - } - - var id = link.attr('id'); - if (!id) { - // Didn't click on one of the voting arrows. - return; - } - // If it is an unvote, the new vote value is 0, - // Otherwise it's 1 for an upvote, or -1 for a downvote. - var value = 0; - if (id.charAt(1) != 'u') { - value = id.charAt(0) == 'u' ? 1 : -1; - } - // The data to be sent to the server. - var d = { - comment_id: id.substring(2), - value: value - }; - - // Swap the vote and unvote links. - link.hide(); - $('#' + id.charAt(0) + (id.charAt(1) == 'u' ? 'v' : 'u') + d.comment_id) - .show(); - - // The div the comment is displayed in. - var div = $('div#cd' + d.comment_id); - var data = div.data('comment'); - - // If this is not an unvote, and the other vote arrow has - // already been pressed, unpress it. - if ((d.value !== 0) && (data.vote === d.value * -1)) { - $('#' + (d.value == 1 ? 'd' : 'u') + 'u' + d.comment_id).hide(); - $('#' + (d.value == 1 ? 'd' : 'u') + 'v' + d.comment_id).show(); - } - - // Update the comments rating in the local data. - data.rating += (data.vote === 0) ? d.value : (d.value - data.vote); - data.vote = d.value; - div.data('comment', data); - - // Change the rating text. - div.find('.rating:first') - .text(data.rating + ' point' + (data.rating == 1 ? '' : 's')); - - // Send the vote information to the server. - $.ajax({ - type: "POST", - url: opts.processVoteURL, - data: d, - error: function(request, textStatus, error) { - showError('Oops, there was a problem casting that vote.'); - } - }); - } - - /** - * Open a reply form used to reply to an existing comment. - */ - function openReply(id) { - // Swap out the reply link for the hide link - $('#rl' + id).hide(); - $('#cr' + id).show(); - - // Add the reply li to the children ul. - var div = $(renderTemplate(replyTemplate, {id: id})).hide(); - $('#cl' + id) - .prepend(div) - // Setup the submit handler for the reply form. - .find('#rf' + id) - .submit(function(event) { - event.preventDefault(); - addComment($('#rf' + id)); - closeReply(id); - }) - .find('input[type=button]') - .click(function() { - closeReply(id); - }); - div.slideDown('fast', function() { - $('#rf' + id).find('textarea').focus(); - }); - } - - /** - * Close the reply form opened with openReply. - */ - function closeReply(id) { - // Remove the reply div from the DOM. - $('#rd' + id).slideUp('fast', function() { - $(this).remove(); - }); - - // Swap out the hide link for the reply link - $('#cr' + id).hide(); - $('#rl' + id).show(); - } - - /** - * Recursively sort a tree of comments using the comp comparator. - */ - function sortComments(comments) { - comments.sort(comp); - $.each(comments, function() { - this.children = sortComments(this.children); - }); - return comments; - } - - /** - * Get the children comments from a ul. If recursive is true, - * recursively include childrens' children. - */ - function getChildren(ul, recursive) { - var children = []; - ul.children().children("[id^='cd']") - .each(function() { - var comment = $(this).data('comment'); - if (recursive) - comment.children = getChildren($(this).find('#cl' + comment.id), true); - children.push(comment); - }); - return children; - } - - /** Create a div to display a comment in. */ - function createCommentDiv(comment) { - if (!comment.displayed && !opts.moderator) { - return $('<div class="moderate">Thank you! Your comment will show up ' - + 'once it is has been approved by a moderator.</div>'); - } - // Prettify the comment rating. - comment.pretty_rating = comment.rating + ' point' + - (comment.rating == 1 ? '' : 's'); - // Make a class (for displaying not yet moderated comments differently) - comment.css_class = comment.displayed ? '' : ' moderate'; - // Create a div for this comment. - var context = $.extend({}, opts, comment); - var div = $(renderTemplate(commentTemplate, context)); - - // If the user has voted on this comment, highlight the correct arrow. - if (comment.vote) { - var direction = (comment.vote == 1) ? 'u' : 'd'; - div.find('#' + direction + 'v' + comment.id).hide(); - div.find('#' + direction + 'u' + comment.id).show(); - } - - if (opts.moderator || comment.text != '[deleted]') { - div.find('a.reply').show(); - if (comment.proposal_diff) - div.find('#sp' + comment.id).show(); - if (opts.moderator && !comment.displayed) - div.find('#cm' + comment.id).show(); - if (opts.moderator || (opts.username == comment.username)) - div.find('#dc' + comment.id).show(); - } - return div; - } - - /** - * A simple template renderer. Placeholders such as <%id%> are replaced - * by context['id'] with items being escaped. Placeholders such as <#id#> - * are not escaped. - */ - function renderTemplate(template, context) { - var esc = $(document.createElement('div')); - - function handle(ph, escape) { - var cur = context; - $.each(ph.split('.'), function() { - cur = cur[this]; - }); - return escape ? esc.text(cur || "").html() : cur; - } - - return template.replace(/<([%#])([\w\.]*)\1>/g, function() { - return handle(arguments[2], arguments[1] == '%' ? true : false); - }); - } - - /** Flash an error message briefly. */ - function showError(message) { - $(document.createElement('div')).attr({'class': 'popup-error'}) - .append($(document.createElement('div')) - .attr({'class': 'error-message'}).text(message)) - .appendTo('body') - .fadeIn("slow") - .delay(2000) - .fadeOut("slow"); - } - - /** Add a link the user uses to open the comments popup. */ - $.fn.comment = function() { - return this.each(function() { - var id = $(this).attr('id').substring(1); - var count = COMMENT_METADATA[id]; - var title = count + ' comment' + (count == 1 ? 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<link rel="stylesheet" href="_static/pygments.css" type="text/css" /> - - <script type="text/javascript"> - var DOCUMENTATION_OPTIONS = { - URL_ROOT: './', - VERSION: '1.6', - COLLAPSE_INDEX: false, - FILE_SUFFIX: '.html', - HAS_SOURCE: true - }; - </script> - <script type="text/javascript" src="_static/jquery.js"></script> - <script type="text/javascript" src="_static/underscore.js"></script> - <script type="text/javascript" src="_static/doctools.js"></script> - <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script> - <link rel="top" title="PyASTRAToolbox 1.6 documentation" href="index.html" /> - <link rel="next" title="Sparse matrices: the matrix module" href="matrix.html" /> - <link rel="prev" title="Projector object: the projector module" href="projector.html" /> - </head> - <body> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="genindex.html" title="General Index" - accesskey="I">index</a></li> - <li class="right" > - <a href="py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li class="right" > - <a href="matrix.html" title="Sparse matrices: the matrix module" - accesskey="N">next</a> |</li> - <li class="right" > - <a href="projector.html" title="Projector object: the projector module" - accesskey="P">previous</a> |</li> - <li><a href="index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - </ul> - </div> - - <div class="document"> - <div class="documentwrapper"> - <div class="bodywrapper"> - <div class="body"> - - <div class="section" id="module-astra.algorithm"> -<span id="algorithms-the-algorithm-module"></span><h1>Algorithms: the <tt class="xref py py-mod docutils literal"><span class="pre">algorithm</span></tt> module<a class="headerlink" href="#module-astra.algorithm" title="Permalink to this headline">¶</a></h1> -<dl class="function"> -<dt id="astra.algorithm.clear"> -<tt class="descclassname">astra.algorithm.</tt><tt class="descname">clear</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/algorithm.html#clear"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.algorithm.clear" title="Permalink to this definition">¶</a></dt> -<dd><p>Clear all matrix objects.</p> -</dd></dl> - -<dl class="function"> -<dt id="astra.algorithm.create"> -<tt class="descclassname">astra.algorithm.</tt><tt class="descname">create</tt><big>(</big><em>config</em><big>)</big><a class="reference internal" href="_modules/astra/algorithm.html#create"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.algorithm.create" title="Permalink to this definition">¶</a></dt> -<dd><p>Create algorithm object.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>config</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) – Algorithm options.</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> – the ID of the constructed object.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.algorithm.delete"> -<tt class="descclassname">astra.algorithm.</tt><tt class="descname">delete</tt><big>(</big><em>ids</em><big>)</big><a class="reference internal" href="_modules/astra/algorithm.html#delete"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.algorithm.delete" title="Permalink to this definition">¶</a></dt> -<dd><p>Delete a matrix object.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>ids</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#list" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">list</span></tt></a>) – ID or list of ID’s to delete.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.algorithm.get_res_norm"> -<tt class="descclassname">astra.algorithm.</tt><tt class="descname">get_res_norm</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/algorithm.html#get_res_norm"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.algorithm.get_res_norm" title="Permalink to this definition">¶</a></dt> -<dd><p>Get residual norm of algorithm.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of object.</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a> – The residual norm.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.algorithm.info"> -<tt class="descclassname">astra.algorithm.</tt><tt class="descname">info</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/algorithm.html#info"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.algorithm.info" title="Permalink to this definition">¶</a></dt> -<dd><p>Print info on matrix objects in memory.</p> -</dd></dl> - -<dl class="function"> -<dt id="astra.algorithm.run"> -<tt class="descclassname">astra.algorithm.</tt><tt class="descname">run</tt><big>(</big><em>i</em>, <em>iterations=1</em><big>)</big><a class="reference internal" href="_modules/astra/algorithm.html#run"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.algorithm.run" title="Permalink to this definition">¶</a></dt> -<dd><p>Run an algorithm.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple"> -<li><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of object.</li> -<li><strong>iterations</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Number of iterations to run.</li> -</ul> -</td> -</tr> -</tbody> -</table> -</dd></dl> - 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\ No newline at end of file diff --git a/python/docSRC/_build/html/astra.html b/python/docSRC/_build/html/astra.html deleted file mode 100644 index 42d68b8..0000000 --- a/python/docSRC/_build/html/astra.html +++ /dev/null @@ -1,169 +0,0 @@ -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" - "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> - - -<html xmlns="http://www.w3.org/1999/xhtml"> - <head> - <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> - - <title>Additional ASTRA methods: the astra module — PyASTRAToolbox 1.6 documentation</title> - - <link rel="stylesheet" href="_static/default.css" type="text/css" /> - <link rel="stylesheet" href="_static/pygments.css" type="text/css" /> - - <script type="text/javascript"> - var DOCUMENTATION_OPTIONS = { - URL_ROOT: './', - VERSION: '1.6', - COLLAPSE_INDEX: false, - FILE_SUFFIX: '.html', - HAS_SOURCE: true - }; - </script> - <script type="text/javascript" src="_static/jquery.js"></script> - <script type="text/javascript" src="_static/underscore.js"></script> - 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- <div class="section" id="module-astra.astra"> -<span id="additional-astra-methods-the-astra-module"></span><h1>Additional ASTRA methods: the <tt class="xref py py-mod docutils literal"><span class="pre">astra</span></tt> module<a class="headerlink" href="#module-astra.astra" title="Permalink to this headline">¶</a></h1> -<dl class="function"> -<dt id="astra.astra.credits"> -<tt class="descclassname">astra.astra.</tt><tt class="descname">credits</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/astra.html#credits"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.astra.credits" title="Permalink to this definition">¶</a></dt> -<dd><p>Print credits of the ASTRA Toolbox.</p> -</dd></dl> - -<dl class="function"> -<dt id="astra.astra.set_gpu_index"> -<tt class="descclassname">astra.astra.</tt><tt class="descname">set_gpu_index</tt><big>(</big><em>idx</em><big>)</big><a class="reference internal" href="_modules/astra/astra.html#set_gpu_index"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.astra.set_gpu_index" title="Permalink to this definition">¶</a></dt> -<dd><p>Set default GPU index to use.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>idx</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – GPU index</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.astra.use_cuda"> -<tt class="descclassname">astra.astra.</tt><tt class="descname">use_cuda</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/astra.html#use_cuda"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.astra.use_cuda" title="Permalink to this definition">¶</a></dt> -<dd><p>Test if CUDA is enabled.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a> – <tt class="docutils literal"><span class="pre">True</span></tt> if CUDA is enabled.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.astra.version"> -<tt class="descclassname">astra.astra.</tt><tt class="descname">version</tt><big>(</big><em>printToScreen=False</em><big>)</big><a class="reference internal" href="_modules/astra/astra.html#version"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.astra.version" title="Permalink to this definition">¶</a></dt> -<dd><p>Check version of the ASTRA Toolbox.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>printToScreen</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a>) – If <tt class="docutils literal"><span class="pre">True</span></tt>, print version string. If <tt class="docutils literal"><span class="pre">False</span></tt>, return version integer.</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><tt class="xref py py-class docutils literal"><span class="pre">string</span></tt> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> – The version string or integer.</td> -</tr> -</tbody> -</table> -</dd></dl> - -</div> - - - </div> - </div> - </div> - <div class="sphinxsidebar"> - <div class="sphinxsidebarwrapper"> - <h4>Previous topic</h4> - <p class="topless"><a href="matlab.html" - title="previous chapter">MATLAB compatibility interface: the <tt class="docutils literal"><span class="pre">matlab</span></tt> module</a></p> - <h3>This Page</h3> - <ul class="this-page-menu"> - <li><a href="_sources/astra.txt" - rel="nofollow">Show Source</a></li> - </ul> -<div id="searchbox" style="display: none"> - <h3>Quick search</h3> - <form class="search" action="search.html" method="get"> - <input type="text" name="q" /> - <input type="submit" value="Go" /> - <input type="hidden" name="check_keywords" value="yes" /> - <input type="hidden" name="area" value="default" /> - </form> - <p class="searchtip" style="font-size: 90%"> - Enter search terms or a module, class or function name. - </p> -</div> -<script type="text/javascript">$('#searchbox').show(0);</script> - </div> - </div> - <div class="clearer"></div> - </div> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="genindex.html" title="General Index" - >index</a></li> - <li class="right" > - <a href="py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li class="right" > - <a href="matlab.html" title="MATLAB compatibility interface: the matlab module" - >previous</a> |</li> - <li><a href="index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - </ul> - </div> - - <div class="footer"> - © Copyright 2013, Centrum Wiskunde & Informatica, Amsterdam. - Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3. - </div> -<script> - (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ - (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), - m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) - })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); - - ga('create', 'UA-40340335-1', 'dmpelt.github.io'); - ga('send', 'pageview'); - -</script> - - </body> -</html>
\ No newline at end of file diff --git a/python/docSRC/_build/html/creators.html b/python/docSRC/_build/html/creators.html deleted file mode 100644 index 2f29232..0000000 --- a/python/docSRC/_build/html/creators.html +++ /dev/null @@ -1,520 +0,0 @@ -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" - "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> - - -<html xmlns="http://www.w3.org/1999/xhtml"> - <head> - <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> - - <title>Creation of objects: the creators module — PyASTRAToolbox 1.6 documentation</title> - - <link rel="stylesheet" href="_static/default.css" type="text/css" /> - <link rel="stylesheet" href="_static/pygments.css" type="text/css" /> - - <script type="text/javascript"> - var DOCUMENTATION_OPTIONS = { - URL_ROOT: './', - VERSION: '1.6', - COLLAPSE_INDEX: false, - FILE_SUFFIX: '.html', - HAS_SOURCE: true - }; - </script> - <script type="text/javascript" src="_static/jquery.js"></script> - 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accesskey="P">previous</a> |</li> - <li><a href="index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - </ul> - </div> - - <div class="document"> - <div class="documentwrapper"> - <div class="bodywrapper"> - <div class="body"> - - <div class="section" id="module-astra.creators"> -<span id="creation-of-objects-the-creators-module"></span><h1>Creation of objects: the <tt class="xref py py-mod docutils literal"><span class="pre">creators</span></tt> module<a class="headerlink" href="#module-astra.creators" title="Permalink to this headline">¶</a></h1> -<dl class="function"> -<dt id="astra.creators.astra_dict"> -<tt class="descclassname">astra.creators.</tt><tt class="descname">astra_dict</tt><big>(</big><em>intype</em><big>)</big><a class="reference internal" href="_modules/astra/creators.html#astra_dict"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.creators.astra_dict" title="Permalink to this definition">¶</a></dt> -<dd><p>Creates a dict to use with the ASTRA Toolbox.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>intype</strong> (<tt class="xref py py-class docutils literal"><span class="pre">string</span></tt>) – Type of the ASTRA object.</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a> – An ASTRA dict of type <tt class="docutils literal"><span class="pre">intype</span></tt>.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.creators.create_backprojection"> -<tt class="descclassname">astra.creators.</tt><tt class="descname">create_backprojection</tt><big>(</big><em>data</em>, <em>proj_id</em>, <em>useCUDA=False</em>, <em>returnData=True</em><big>)</big><a class="reference internal" href="_modules/astra/creators.html#create_backprojection"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.creators.create_backprojection" title="Permalink to this definition">¶</a></dt> -<dd><p>Create a backprojection of a sinogram (2D).</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> -<li><strong>data</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Sinogram data or ID.</li> -<li><strong>proj_id</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of the projector to use.</li> -<li><strong>useCUDA</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a>) – If <tt class="docutils literal"><span class="pre">True</span></tt>, use CUDA for the calculation.</li> -<li><strong>returnData</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a>) – If False, only return the ID of the backprojection.</li> -</ul> -</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> or (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>, <a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) – If <tt class="docutils literal"><span class="pre">returnData=False</span></tt>, returns the ID of the backprojection. Otherwise, returns a tuple containing the ID of the backprojection and the backprojection itself, in that order.</p> -</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.creators.create_backprojection3d_gpu"> -<tt class="descclassname">astra.creators.</tt><tt class="descname">create_backprojection3d_gpu</tt><big>(</big><em>data</em>, <em>proj_geom</em>, <em>vol_geom</em>, <em>returnData=True</em><big>)</big><a class="reference internal" href="_modules/astra/creators.html#create_backprojection3d_gpu"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.creators.create_backprojection3d_gpu" title="Permalink to this definition">¶</a></dt> -<dd><p>Create a backprojection of a sinogram (3D) using CUDA.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> -<li><strong>data</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Sinogram data or ID.</li> -<li><strong>proj_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) – Projection geometry.</li> -<li><strong>vol_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) – Volume geometry.</li> -<li><strong>returnData</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a>) – If False, only return the ID of the backprojection.</li> -</ul> -</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> or (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>, <a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) – If <tt class="docutils literal"><span class="pre">returnData=False</span></tt>, returns the ID of the backprojection. Otherwise, returns a tuple containing the ID of the backprojection and the backprojection itself, in that order.</p> -</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.creators.create_proj_geom"> -<tt class="descclassname">astra.creators.</tt><tt class="descname">create_proj_geom</tt><big>(</big><em>intype</em>, <em>*args</em><big>)</big><a class="reference internal" href="_modules/astra/creators.html#create_proj_geom"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.creators.create_proj_geom" title="Permalink to this definition">¶</a></dt> -<dd><p>Create a projection geometry.</p> -<p>This method can be called in a number of ways:</p> -<p><tt class="docutils literal"><span class="pre">create_proj_geom('parallel',</span> <span class="pre">detector_spacing,</span> <span class="pre">det_count,</span> <span class="pre">angles)</span></tt>:</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> -<li><strong>detector_spacing</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a>) – Distance between two adjacent detector pixels.</li> -<li><strong>det_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Number of detector pixels.</li> -<li><strong>angles</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) – Array of angles in radians.</li> -</ul> -</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last">A parallel projection geometry.</p> -</td> -</tr> -</tbody> -</table> -<p><tt class="docutils literal"><span class="pre">create_proj_geom('fanflat',</span> <span class="pre">det_width,</span> <span class="pre">det_count,</span> <span class="pre">angles,</span> <span class="pre">source_origin,</span> <span class="pre">source_det)</span></tt>:</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> -<li><strong>det_width</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a>) – Size of a detector pixel.</li> -<li><strong>det_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Number of detector pixels.</li> -<li><strong>angles</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) – Array of angles in radians.</li> -<li><strong>source_origin</strong> – Position of the source.</li> -<li><strong>source_det</strong> – Position of the detector</li> -</ul> -</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last">A fan-beam projection geometry.</p> -</td> -</tr> -</tbody> -</table> -<p><tt class="docutils literal"><span class="pre">create_proj_geom('fanflat_vec',</span> <span class="pre">det_count,</span> <span class="pre">V)</span></tt>:</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> -<li><strong>det_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Number of detector pixels.</li> -<li><strong>V</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) – Vector array.</li> -</ul> -</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last">A fan-beam projection geometry.</p> -</td> -</tr> -</tbody> -</table> -<p><tt class="docutils literal"><span class="pre">create_proj_geom('parallel3d',</span> <span class="pre">detector_spacing_x,</span> <span class="pre">detector_spacing_y,</span> <span class="pre">det_row_count,</span> <span class="pre">det_col_count,</span> <span class="pre">angles)</span></tt>:</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> -<li><strong>detector_spacing_*</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a>) – Distance between two adjacent detector pixels.</li> -<li><strong>det_row_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Number of detector pixel rows.</li> -<li><strong>det_col_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Number of detector pixel columns.</li> -<li><strong>angles</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) – Array of angles in radians.</li> -</ul> -</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last">A parallel projection geometry.</p> -</td> -</tr> -</tbody> -</table> -<p><tt class="docutils literal"><span class="pre">create_proj_geom('cone',</span> <span class="pre">detector_spacing_x,</span> <span class="pre">detector_spacing_y,</span> <span class="pre">det_row_count,</span> <span class="pre">det_col_count,</span> <span class="pre">angles,</span> <span class="pre">source_origin,</span> <span class="pre">source_det)</span></tt>:</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> -<li><strong>detector_spacing_*</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a>) – Distance between two adjacent detector pixels.</li> -<li><strong>det_row_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Number of detector pixel rows.</li> -<li><strong>det_col_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Number of detector pixel columns.</li> -<li><strong>angles</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) – Array of angles in radians.</li> -<li><strong>source_origin</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a>) – Distance between point source and origin.</li> -<li><strong>source_det</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a>) – Distance between the detector and origin.</li> -</ul> -</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last">A cone-beam projection geometry.</p> -</td> -</tr> -</tbody> -</table> -<p><tt class="docutils literal"><span class="pre">create_proj_geom('cone_vec',</span> <span class="pre">det_row_count,</span> <span class="pre">det_col_count,</span> <span class="pre">V)</span></tt>:</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> -<li><strong>det_row_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Number of detector pixel rows.</li> -<li><strong>det_col_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Number of detector pixel columns.</li> -<li><strong>V</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) – Vector array.</li> -</ul> -</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last">A cone-beam projection geometry.</p> -</td> -</tr> -</tbody> -</table> -<p><tt class="docutils literal"><span class="pre">create_proj_geom('parallel3d_vec',</span> <span class="pre">det_row_count,</span> <span class="pre">det_col_count,</span> <span class="pre">V)</span></tt>:</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> -<li><strong>det_row_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Number of detector pixel rows.</li> -<li><strong>det_col_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Number of detector pixel columns.</li> -<li><strong>V</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) – Vector array.</li> -</ul> -</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last">A parallel projection geometry.</p> -</td> -</tr> -</tbody> -</table> -<p><tt class="docutils literal"><span class="pre">create_proj_geom('sparse_matrix',</span> <span class="pre">det_width,</span> <span class="pre">det_count,</span> <span class="pre">angles,</span> <span class="pre">matrix_id)</span></tt>:</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> -<li><strong>det_width</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a>) – Size of a detector pixel.</li> -<li><strong>det_count</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Number of detector pixels.</li> -<li><strong>angles</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) – Array of angles in radians.</li> -<li><strong>matrix_id</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of the sparse matrix.</li> -</ul> -</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last">A projection geometry based on a sparse matrix.</p> -</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.creators.create_projector"> -<tt class="descclassname">astra.creators.</tt><tt class="descname">create_projector</tt><big>(</big><em>proj_type</em>, <em>proj_geom</em>, <em>vol_geom</em><big>)</big><a class="reference internal" href="_modules/astra/creators.html#create_projector"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.creators.create_projector" title="Permalink to this definition">¶</a></dt> -<dd><p>Create a 2D projector.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> -<li><strong>proj_type</strong> (<tt class="xref py py-class docutils literal"><span class="pre">string</span></tt>) – Projector type, such as <tt class="docutils literal"><span class="pre">'line'</span></tt>, <tt class="docutils literal"><span class="pre">'linear'</span></tt>, ...</li> -<li><strong>proj_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) – Projection geometry.</li> -<li><strong>vol_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) – Volume geometry.</li> -</ul> -</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> – The ID of the projector.</p> -</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.creators.create_reconstruction"> -<tt class="descclassname">astra.creators.</tt><tt class="descname">create_reconstruction</tt><big>(</big><em>rec_type</em>, <em>proj_id</em>, <em>sinogram</em>, <em>iterations=1</em>, <em>use_mask='no'</em>, <em>mask=array([]</em>, <em>dtype=float64)</em>, <em>use_minc='no'</em>, <em>minc=0</em>, <em>use_maxc='no'</em>, <em>maxc=255</em>, <em>returnData=True</em>, <em>filterType=None</em>, <em>filterData=None</em><big>)</big><a class="reference internal" href="_modules/astra/creators.html#create_reconstruction"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.creators.create_reconstruction" title="Permalink to this definition">¶</a></dt> -<dd><p>Create a reconstruction of a sinogram (2D).</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> -<li><strong>rec_type</strong> (<tt class="xref py py-class docutils literal"><span class="pre">string</span></tt>) – Name of the reconstruction algorithm.</li> -<li><strong>proj_id</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of the projector to use.</li> -<li><strong>sinogram</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Sinogram data or ID.</li> -<li><strong>iterations</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Number of iterations to run.</li> -<li><strong>use_mask</strong> (<tt class="docutils literal"><span class="pre">'yes'</span></tt> or <tt class="docutils literal"><span class="pre">'no'</span></tt>) – Whether to use a mask.</li> -<li><strong>mask</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Mask data or ID</li> -<li><strong>use_minc</strong> (<tt class="docutils literal"><span class="pre">'yes'</span></tt> or <tt class="docutils literal"><span class="pre">'no'</span></tt>) – Whether to force a minimum value on the reconstruction pixels.</li> -<li><strong>minc</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a>) – Minimum value to use.</li> -<li><strong>use_maxc</strong> (<tt class="docutils literal"><span class="pre">'yes'</span></tt> or <tt class="docutils literal"><span class="pre">'no'</span></tt>) – Whether to force a maximum value on the reconstruction pixels.</li> -<li><strong>maxc</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a>) – Maximum value to use.</li> -<li><strong>returnData</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a>) – If False, only return the ID of the reconstruction.</li> -<li><strong>filterType</strong> (<tt class="xref py py-class docutils literal"><span class="pre">string</span></tt>) – Which type of filter to use for filter-based methods.</li> -<li><strong>filterData</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) – Optional filter data for filter-based methods.</li> -</ul> -</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> or (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>, <a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) – If <tt class="docutils literal"><span class="pre">returnData=False</span></tt>, returns the ID of the reconstruction. Otherwise, returns a tuple containing the ID of the reconstruction and reconstruction itself, in that order.</p> -</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.creators.create_sino"> -<tt class="descclassname">astra.creators.</tt><tt class="descname">create_sino</tt><big>(</big><em>data</em>, <em>proj_id=None</em>, <em>proj_geom=None</em>, <em>vol_geom=None</em>, <em>useCUDA=False</em>, <em>returnData=True</em>, <em>gpuIndex=None</em><big>)</big><a class="reference internal" href="_modules/astra/creators.html#create_sino"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.creators.create_sino" title="Permalink to this definition">¶</a></dt> -<dd><p>Create a forward projection of an image (2D).</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> -<li><strong>data</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Image data or ID.</li> -<li><strong>proj_id</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of the projector to use.</li> -<li><strong>proj_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) – Projection geometry.</li> -<li><strong>vol_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) – Volume geometry.</li> -<li><strong>useCUDA</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a>) – If <tt class="docutils literal"><span class="pre">True</span></tt>, use CUDA for the calculation.</li> -<li><strong>returnData</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a>) – If False, only return the ID of the forward projection.</li> -<li><strong>gpuIndex</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Optional GPU index.</li> -</ul> -</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> or (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>, <a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>)</p> -</td> -</tr> -</tbody> -</table> -<p>If <tt class="docutils literal"><span class="pre">returnData=False</span></tt>, returns the ID of the forward -projection. Otherwise, returns a tuple containing the ID of the -forward projection and the forward projection itself, in that -order.</p> -<p>The geometry of setup is defined by <tt class="docutils literal"><span class="pre">proj_id</span></tt> or with -<tt class="docutils literal"><span class="pre">proj_geom</span></tt> and <tt class="docutils literal"><span class="pre">vol_geom</span></tt>. If <tt class="docutils literal"><span class="pre">proj_id</span></tt> is given, then -<tt class="docutils literal"><span class="pre">proj_geom</span></tt> and <tt class="docutils literal"><span class="pre">vol_geom</span></tt> must be None and vice versa.</p> -</dd></dl> - -<dl class="function"> -<dt id="astra.creators.create_sino3d_gpu"> -<tt class="descclassname">astra.creators.</tt><tt class="descname">create_sino3d_gpu</tt><big>(</big><em>data</em>, <em>proj_geom</em>, <em>vol_geom</em>, <em>returnData=True</em>, <em>gpuIndex=None</em><big>)</big><a class="reference internal" href="_modules/astra/creators.html#create_sino3d_gpu"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.creators.create_sino3d_gpu" title="Permalink to this definition">¶</a></dt> -<dd><p>Create a forward projection of an image (3D).</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> -<li><strong>data</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Image data or ID.</li> -<li><strong>proj_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) – Projection geometry.</li> -<li><strong>vol_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) – Volume geometry.</li> -<li><strong>returnData</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a>) – If False, only return the ID of the forward projection.</li> -<li><strong>gpuIndex</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Optional GPU index.</li> -</ul> -</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> or (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>, <a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) – If <tt class="docutils literal"><span class="pre">returnData=False</span></tt>, returns the ID of the forward projection. Otherwise, returns a tuple containing the ID of the forward projection and the forward projection itself, in that order.</p> -</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.creators.create_vol_geom"> -<tt class="descclassname">astra.creators.</tt><tt class="descname">create_vol_geom</tt><big>(</big><em>*varargin</em><big>)</big><a class="reference internal" href="_modules/astra/creators.html#create_vol_geom"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.creators.create_vol_geom" title="Permalink to this definition">¶</a></dt> -<dd><p>Create a volume geometry structure.</p> -<p>This method can be called in a number of ways:</p> -<dl class="docutils"> -<dt><tt class="docutils literal"><span class="pre">create_vol_geom(N)</span></tt>:</dt> -<dd><table class="first last docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">returns:</th><td class="field-body">A 2D volume geometry of size <span class="math">\(N \times N\)</span>.</td> -</tr> -</tbody> -</table> -</dd> -<dt><tt class="docutils literal"><span class="pre">create_vol_geom((M,</span> <span class="pre">N))</span></tt>:</dt> -<dd><table class="first last docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">returns:</th><td class="field-body">A 2D volume geometry of size <span class="math">\(M \times N\)</span>.</td> -</tr> -</tbody> -</table> -</dd> -<dt><tt class="docutils literal"><span class="pre">create_vol_geom(M,</span> <span class="pre">N)</span></tt>:</dt> -<dd><table class="first last docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">returns:</th><td class="field-body">A 2D volume geometry of size <span class="math">\(M \times N\)</span>.</td> -</tr> -</tbody> -</table> -</dd> -<dt><tt class="docutils literal"><span class="pre">create_vol_geom(M,</span> <span class="pre">N,</span> <span class="pre">minx,</span> <span class="pre">maxx,</span> <span class="pre">miny,</span> <span class="pre">maxy)</span></tt>:</dt> -<dd><table class="first last docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">returns:</th><td class="field-body">A 2D volume geometry of size <span class="math">\(M \times N\)</span>, windowed as <span class="math">\(minx \leq x \leq maxx\)</span> and <span class="math">\(miny \leq y \leq maxy\)</span>.</td> -</tr> -</tbody> -</table> -</dd> -<dt><tt class="docutils literal"><span class="pre">create_vol_geom((M,</span> <span class="pre">N,</span> <span class="pre">Z))</span></tt>:</dt> -<dd><table class="first last docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">returns:</th><td class="field-body">A 3D volume geometry of size <span class="math">\(M \times N \times Z\)</span>.</td> -</tr> -</tbody> -</table> -</dd> -<dt><tt class="docutils literal"><span class="pre">create_vol_geom(M,</span> <span class="pre">N,</span> <span class="pre">Z)</span></tt>:</dt> -<dd><table class="first last docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">returns:</th><td class="field-body">A 3D volume geometry of size <span class="math">\(M \times N \times Z\)</span>.</td> -</tr> -</tbody> -</table> -</dd> -</dl> -</dd></dl> - 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<li><a href="index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - </ul> - </div> - - <div class="document"> - <div class="documentwrapper"> - <div class="bodywrapper"> - <div class="body"> - - <div class="section" id="module-astra.data2d"> -<span id="d-data-objects-the-data2d-module"></span><h1>2D data objects: the <tt class="xref py py-mod docutils literal"><span class="pre">data2d</span></tt> module<a class="headerlink" href="#module-astra.data2d" title="Permalink to this headline">¶</a></h1> -<dl class="function"> -<dt id="astra.data2d.change_geometry"> -<tt class="descclassname">astra.data2d.</tt><tt class="descname">change_geometry</tt><big>(</big><em>i</em>, <em>geom</em><big>)</big><a class="reference internal" href="_modules/astra/data2d.html#change_geometry"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data2d.change_geometry" title="Permalink to this definition">¶</a></dt> -<dd><p>Change the geometry of a 2D object.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple"> -<li><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of object.</li> -<li><strong>geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) – new geometry.</li> -</ul> -</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.data2d.clear"> -<tt class="descclassname">astra.data2d.</tt><tt class="descname">clear</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/data2d.html#clear"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data2d.clear" title="Permalink to this definition">¶</a></dt> -<dd><p>Clear all 2D data objects.</p> -</dd></dl> - -<dl class="function"> -<dt id="astra.data2d.create"> -<tt class="descclassname">astra.data2d.</tt><tt class="descname">create</tt><big>(</big><em>datatype</em>, <em>geometry</em>, <em>data=None</em><big>)</big><a class="reference internal" href="_modules/astra/data2d.html#create"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data2d.create" title="Permalink to this definition">¶</a></dt> -<dd><p>Create a 2D object.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> -<li><strong>datatype</strong> (<tt class="xref py py-class docutils literal"><span class="pre">string</span></tt>) – Data object type, ‘-vol’ or ‘-sino’.</li> -<li><strong>geometry</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) – Volume or projection geometry.</li> -<li><strong>data</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a> or <a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) – Data to fill the constructed object with, either a scalar or array.</li> -</ul> -</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> – the ID of the constructed object.</p> -</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.data2d.delete"> -<tt class="descclassname">astra.data2d.</tt><tt class="descname">delete</tt><big>(</big><em>ids</em><big>)</big><a class="reference internal" href="_modules/astra/data2d.html#delete"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data2d.delete" title="Permalink to this definition">¶</a></dt> -<dd><p>Delete a 2D object.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>ids</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#list" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">list</span></tt></a>) – ID or list of ID’s to delete.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.data2d.get"> -<tt class="descclassname">astra.data2d.</tt><tt class="descname">get</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/data2d.html#get"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data2d.get" title="Permalink to this definition">¶</a></dt> -<dd><p>Get a 2D object.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of object to get.</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> – The object data.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.data2d.get_geometry"> -<tt class="descclassname">astra.data2d.</tt><tt class="descname">get_geometry</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/data2d.html#get_geometry"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data2d.get_geometry" title="Permalink to this definition">¶</a></dt> -<dd><p>Get the geometry of a 2D object.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of object.</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a> – The geometry of object with ID <tt class="docutils literal"><span class="pre">i</span></tt>.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.data2d.get_shared"> -<tt class="descclassname">astra.data2d.</tt><tt class="descname">get_shared</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/data2d.html#get_shared"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data2d.get_shared" title="Permalink to this definition">¶</a></dt> -<dd><p>Get a 2D object with memory shared between the ASTRA toolbox and numpy array.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of object to get.</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> – The object data.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.data2d.get_single"> -<tt class="descclassname">astra.data2d.</tt><tt class="descname">get_single</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/data2d.html#get_single"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data2d.get_single" title="Permalink to this definition">¶</a></dt> -<dd><p>Get a 2D object in single precision.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of object to get.</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> – The object data.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.data2d.info"> -<tt class="descclassname">astra.data2d.</tt><tt class="descname">info</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/data2d.html#info"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data2d.info" title="Permalink to this definition">¶</a></dt> -<dd><p>Print info on 2D objects in memory.</p> -</dd></dl> - -<dl class="function"> -<dt id="astra.data2d.store"> -<tt class="descclassname">astra.data2d.</tt><tt class="descname">store</tt><big>(</big><em>i</em>, <em>data</em><big>)</big><a class="reference internal" href="_modules/astra/data2d.html#store"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data2d.store" title="Permalink to this definition">¶</a></dt> -<dd><p>Fill existing 2D object with data.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple"> -<li><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of object to fill.</li> -<li><strong>data</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a> or <a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) – Data to fill the object with, either a scalar or array.</li> -</ul> -</td> -</tr> -</tbody> -</table> -</dd></dl> - 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<li><a href="index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - </ul> - </div> - - <div class="document"> - <div class="documentwrapper"> - <div class="bodywrapper"> - <div class="body"> - - <div class="section" id="module-astra.data3d"> -<span id="d-data-objects-the-data3d-module"></span><h1>3D data objects: the <tt class="xref py py-mod docutils literal"><span class="pre">data3d</span></tt> module<a class="headerlink" href="#module-astra.data3d" title="Permalink to this headline">¶</a></h1> -<dl class="function"> -<dt id="astra.data3d.clear"> -<tt class="descclassname">astra.data3d.</tt><tt class="descname">clear</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/data3d.html#clear"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data3d.clear" title="Permalink to this definition">¶</a></dt> -<dd><p>Clear all 3D data objects.</p> -</dd></dl> - -<dl class="function"> -<dt id="astra.data3d.create"> -<tt class="descclassname">astra.data3d.</tt><tt class="descname">create</tt><big>(</big><em>datatype</em>, <em>geometry</em>, <em>data=None</em><big>)</big><a class="reference internal" href="_modules/astra/data3d.html#create"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data3d.create" title="Permalink to this definition">¶</a></dt> -<dd><p>Create a 3D object.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> -<li><strong>datatype</strong> (<tt class="xref py py-class docutils literal"><span class="pre">string</span></tt>) – Data object type, ‘-vol’ or ‘-sino’.</li> -<li><strong>geometry</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) – Volume or projection geometry.</li> -<li><strong>data</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a> or <a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) – Data to fill the constructed object with, either a scalar or array.</li> -</ul> -</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> – the ID of the constructed object.</p> -</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.data3d.delete"> -<tt class="descclassname">astra.data3d.</tt><tt class="descname">delete</tt><big>(</big><em>ids</em><big>)</big><a class="reference internal" href="_modules/astra/data3d.html#delete"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data3d.delete" title="Permalink to this definition">¶</a></dt> -<dd><p>Delete a 2D object.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>ids</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#list" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">list</span></tt></a>) – ID or list of ID’s to delete.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.data3d.dimensions"> -<tt class="descclassname">astra.data3d.</tt><tt class="descname">dimensions</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/data3d.html#dimensions"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data3d.dimensions" title="Permalink to this definition">¶</a></dt> -<dd><p>Get dimensions of a 3D object.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of object.</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><tt class="xref py py-class docutils literal"><span class="pre">tuple</span></tt> – dimensions of object with ID <tt class="docutils literal"><span class="pre">i</span></tt>.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.data3d.get"> -<tt class="descclassname">astra.data3d.</tt><tt class="descname">get</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/data3d.html#get"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data3d.get" title="Permalink to this definition">¶</a></dt> -<dd><p>Get a 3D object.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of object to get.</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> – The object data.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.data3d.get_shared"> -<tt class="descclassname">astra.data3d.</tt><tt class="descname">get_shared</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/data3d.html#get_shared"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data3d.get_shared" title="Permalink to this definition">¶</a></dt> -<dd><p>Get a 3D object with memory shared between the ASTRA toolbox and numpy array.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of object to get.</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> – The object data.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.data3d.get_single"> -<tt class="descclassname">astra.data3d.</tt><tt class="descname">get_single</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/data3d.html#get_single"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data3d.get_single" title="Permalink to this definition">¶</a></dt> -<dd><p>Get a 3D object in single precision.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of object to get.</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> – The object data.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.data3d.info"> -<tt class="descclassname">astra.data3d.</tt><tt class="descname">info</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/data3d.html#info"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data3d.info" title="Permalink to this definition">¶</a></dt> -<dd><p>Print info on 3D objects in memory.</p> -</dd></dl> - -<dl class="function"> -<dt id="astra.data3d.store"> -<tt class="descclassname">astra.data3d.</tt><tt class="descname">store</tt><big>(</big><em>i</em>, <em>data</em><big>)</big><a class="reference internal" href="_modules/astra/data3d.html#store"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.data3d.store" title="Permalink to this definition">¶</a></dt> -<dd><p>Fill existing 3D object with data.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple"> -<li><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of object to fill.</li> -<li><strong>data</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a> or <a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) – Data to fill the object with, either a scalar or array.</li> -</ul> -</td> -</tr> -</tbody> -</table> -</dd></dl> - 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\ No newline at end of file diff --git a/python/docSRC/_build/html/functions.html b/python/docSRC/_build/html/functions.html deleted file mode 100644 index 7ec397e..0000000 --- a/python/docSRC/_build/html/functions.html +++ /dev/null @@ -1,236 +0,0 @@ -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" - "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> - - -<html xmlns="http://www.w3.org/1999/xhtml"> - <head> - <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> - - <title>Additional functions: the functions module — PyASTRAToolbox 1.6 documentation</title> - - <link rel="stylesheet" href="_static/default.css" type="text/css" /> - <link rel="stylesheet" href="_static/pygments.css" type="text/css" /> - - <script type="text/javascript"> - var DOCUMENTATION_OPTIONS = { - URL_ROOT: './', - VERSION: '1.6', - COLLAPSE_INDEX: false, - FILE_SUFFIX: '.html', - HAS_SOURCE: true - }; - </script> - <script type="text/javascript" src="_static/jquery.js"></script> - <script type="text/javascript" src="_static/underscore.js"></script> - <script type="text/javascript" src="_static/doctools.js"></script> - <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script> - <link rel="top" title="PyASTRAToolbox 1.6 documentation" href="index.html" /> - <link rel="next" title="Helper class: the ASTRAProjector module" href="ASTRAProjector.html" /> - <link rel="prev" title="Creation of objects: the creators module" href="creators.html" /> - </head> - <body> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="genindex.html" title="General Index" - accesskey="I">index</a></li> - <li class="right" > - <a href="py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li class="right" > - <a href="ASTRAProjector.html" title="Helper class: the ASTRAProjector module" - accesskey="N">next</a> |</li> - <li class="right" > - <a href="creators.html" title="Creation of objects: the creators module" - accesskey="P">previous</a> |</li> - <li><a href="index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - </ul> - </div> - - <div class="document"> - <div class="documentwrapper"> - <div class="bodywrapper"> - <div class="body"> - - <div class="section" id="module-astra.functions"> -<span id="additional-functions-the-functions-module"></span><h1>Additional functions: the <tt class="xref py py-mod docutils literal"><span class="pre">functions</span></tt> module<a class="headerlink" href="#module-astra.functions" title="Permalink to this headline">¶</a></h1> -<p>Additional functions for PyAstraToolbox.</p> -<dl class="function"> -<dt id="astra.functions.add_noise_to_sino"> -<tt class="descclassname">astra.functions.</tt><tt class="descname">add_noise_to_sino</tt><big>(</big><em>sinogram_in</em>, <em>I0</em>, <em>seed=None</em><big>)</big><a class="reference internal" href="_modules/astra/functions.html#add_noise_to_sino"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.functions.add_noise_to_sino" title="Permalink to this definition">¶</a></dt> -<dd><p>Adds Poisson noise to a sinogram.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> -<li><strong>sinogram_in</strong> (<a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a>) – Sinogram to add noise to.</li> -<li><strong>I0</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#float" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">float</span></tt></a>) – Background intensity. Lower values lead to higher noise.</li> -</ul> -</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.9)"><tt class="xref py py-class docutils literal"><span class="pre">numpy.ndarray</span></tt></a> – the sinogram with added noise.</p> -</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.functions.clear"> -<tt class="descclassname">astra.functions.</tt><tt class="descname">clear</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/functions.html#clear"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.functions.clear" title="Permalink to this definition">¶</a></dt> -<dd><p>Clears all used memory of the ASTRA Toolbox.</p> -<div class="admonition note"> -<p class="first admonition-title">Note</p> -<p class="last">This is irreversible.</p> -</div> -</dd></dl> - -<dl class="function"> -<dt id="astra.functions.data_op"> -<tt class="descclassname">astra.functions.</tt><tt class="descname">data_op</tt><big>(</big><em>op</em>, <em>data</em>, <em>scalar</em>, <em>gpu_core</em>, <em>mask=None</em><big>)</big><a class="reference internal" href="_modules/astra/functions.html#data_op"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.functions.data_op" title="Permalink to this definition">¶</a></dt> -<dd><p>Perform data operation on data.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple"> -<li><strong>op</strong> – Operation to perform.</li> -<li><strong>data</strong> – Data to perform operation on.</li> -<li><strong>scalar</strong> – Scalar argument to data operation.</li> -<li><strong>gpu_core</strong> – GPU core to perform operation on.</li> -<li><strong>mask</strong> – Optional mask.</li> -</ul> -</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.functions.geom_2vec"> -<tt class="descclassname">astra.functions.</tt><tt class="descname">geom_2vec</tt><big>(</big><em>proj_geom</em><big>)</big><a class="reference internal" href="_modules/astra/functions.html#geom_2vec"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.functions.geom_2vec" title="Permalink to this definition">¶</a></dt> -<dd><p>Returns a vector-based projection geometry from a basic projection geometry.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>proj_geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) – Projection geometry to convert</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.functions.geom_size"> -<tt class="descclassname">astra.functions.</tt><tt class="descname">geom_size</tt><big>(</big><em>geom</em>, <em>dim=None</em><big>)</big><a class="reference internal" href="_modules/astra/functions.html#geom_size"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.functions.geom_size" title="Permalink to this definition">¶</a></dt> -<dd><p>Returns the size of a volume or sinogram, based on the projection or volume geometry.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple"> -<li><strong>geom</strong> – Geometry to calculate size from</li> -<li><strong>dim</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – Optional axis index to return</li> -</ul> -</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.functions.move_vol_geom"> -<tt class="descclassname">astra.functions.</tt><tt class="descname">move_vol_geom</tt><big>(</big><em>geom</em>, <em>pos</em>, <em>is_relative=False</em><big>)</big><a class="reference internal" href="_modules/astra/functions.html#move_vol_geom"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.functions.move_vol_geom" title="Permalink to this definition">¶</a></dt> -<dd><p>Moves center of volume geometry to new position.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> -<li><strong>geom</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) – Input volume geometry</li> -<li><strong>pos</strong> (<tt class="xref py py-class docutils literal"><span class="pre">tuple</span></tt>) – Tuple (x,y[,z]) for new position, with the center of the image at (0,0[,0])</li> -<li><strong>is_relative</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#bool" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">bool</span></tt></a>) – Whether new position is relative to the old position</li> -</ul> -</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last"><a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a> – Volume geometry with the new center</p> -</td> -</tr> -</tbody> -</table> -</dd></dl> - 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</dt> - - - <dt><a href="functions.html#astra.functions.clear">(in module astra.functions)</a> - </dt> - - - <dt><a href="matrix.html#astra.matrix.clear">(in module astra.matrix)</a> - </dt> - - - <dt><a href="projector.html#astra.projector.clear">(in module astra.projector)</a> - </dt> - - </dl></dd> - - <dt><a href="algorithm.html#astra.algorithm.create">create() (in module astra.algorithm)</a> - </dt> - - <dd><dl> - - <dt><a href="data2d.html#astra.data2d.create">(in module astra.data2d)</a> - </dt> - - - <dt><a href="data3d.html#astra.data3d.create">(in module astra.data3d)</a> - </dt> - - - <dt><a href="matrix.html#astra.matrix.create">(in module astra.matrix)</a> - </dt> - - - <dt><a href="projector.html#astra.projector.create">(in module astra.projector)</a> - </dt> - - </dl></dd> - - <dt><a href="creators.html#astra.creators.create_backprojection">create_backprojection() (in module astra.creators)</a> - </dt> - - - <dt><a href="creators.html#astra.creators.create_backprojection3d_gpu">create_backprojection3d_gpu() (in module astra.creators)</a> - </dt> - - - <dt><a href="creators.html#astra.creators.create_proj_geom">create_proj_geom() (in module astra.creators)</a> - </dt> - - </dl></td> - <td style="width: 33%" valign="top"><dl> - - <dt><a href="creators.html#astra.creators.create_projector">create_projector() (in module astra.creators)</a> - </dt> - - - <dt><a href="creators.html#astra.creators.create_reconstruction">create_reconstruction() (in module astra.creators)</a> - </dt> - - - <dt><a href="creators.html#astra.creators.create_sino">create_sino() (in module astra.creators)</a> - </dt> - - - <dt><a href="creators.html#astra.creators.create_sino3d_gpu">create_sino3d_gpu() (in module astra.creators)</a> - </dt> - - - <dt><a href="creators.html#astra.creators.create_vol_geom">create_vol_geom() (in module astra.creators)</a> - </dt> - - - <dt><a href="astra.html#astra.astra.credits">credits() (in module astra.astra)</a> - </dt> - - </dl></td> -</tr></table> - -<h2 id="D">D</h2> -<table style="width: 100%" class="indextable genindextable"><tr> - <td style="width: 33%" valign="top"><dl> - - <dt><a href="matlab.html#astra.matlab.data2d">data2d() (in module astra.matlab)</a> - </dt> - - - <dt><a href="matlab.html#astra.matlab.data3d">data3d() (in module astra.matlab)</a> - </dt> - - - <dt><a href="functions.html#astra.functions.data_op">data_op() (in module astra.functions)</a> - </dt> - - </dl></td> - <td style="width: 33%" valign="top"><dl> - - <dt><a href="algorithm.html#astra.algorithm.delete">delete() (in module astra.algorithm)</a> - </dt> - - <dd><dl> - - <dt><a href="data2d.html#astra.data2d.delete">(in module astra.data2d)</a> - </dt> - - - <dt><a href="data3d.html#astra.data3d.delete">(in module astra.data3d)</a> - </dt> - - - <dt><a href="matrix.html#astra.matrix.delete">(in module astra.matrix)</a> - </dt> - - - <dt><a href="projector.html#astra.projector.delete">(in module astra.projector)</a> - </dt> - - </dl></dd> - - <dt><a href="data3d.html#astra.data3d.dimensions">dimensions() (in module astra.data3d)</a> - </dt> - 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- <dt><a href="data2d.html#astra.data2d.get_geometry">get_geometry() (in module astra.data2d)</a> - </dt> - - </dl></td> - <td style="width: 33%" valign="top"><dl> - - <dt><a href="algorithm.html#astra.algorithm.get_res_norm">get_res_norm() (in module astra.algorithm)</a> - </dt> - - - <dt><a href="data2d.html#astra.data2d.get_shared">get_shared() (in module astra.data2d)</a> - </dt> - - <dd><dl> - - <dt><a href="data3d.html#astra.data3d.get_shared">(in module astra.data3d)</a> - </dt> - - </dl></dd> - - <dt><a href="data2d.html#astra.data2d.get_single">get_single() (in module astra.data2d)</a> - </dt> - - <dd><dl> - - <dt><a href="data3d.html#astra.data3d.get_single">(in module astra.data3d)</a> - </dt> - - </dl></dd> - - <dt><a href="matrix.html#astra.matrix.get_size">get_size() (in module astra.matrix)</a> - </dt> - - </dl></td> -</tr></table> - -<h2 id="I">I</h2> -<table style="width: 100%" class="indextable genindextable"><tr> - <td style="width: 33%" valign="top"><dl> - - <dt><a href="algorithm.html#astra.algorithm.info">info() (in module astra.algorithm)</a> - 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<td style="width: 33%" valign="top"><dl> - - <dt><a href="projector.html#astra.projector.projection_geometry">projection_geometry() (in module astra.projector)</a> - </dt> - - </dl></td> - <td style="width: 33%" valign="top"><dl> - - <dt><a href="matlab.html#astra.matlab.projector">projector() (in module astra.matlab)</a> - </dt> - - </dl></td> -</tr></table> - -<h2 id="R">R</h2> -<table style="width: 100%" class="indextable genindextable"><tr> - <td style="width: 33%" valign="top"><dl> - - <dt><a href="ASTRAProjector.html#astra.ASTRAProjector.ASTRAProjector2D.reconstruct">reconstruct() (astra.ASTRAProjector.ASTRAProjector2D method)</a> - </dt> - - </dl></td> - <td style="width: 33%" valign="top"><dl> - - <dt><a href="algorithm.html#astra.algorithm.run">run() (in module astra.algorithm)</a> - </dt> - - </dl></td> -</tr></table> - -<h2 id="S">S</h2> -<table style="width: 100%" class="indextable genindextable"><tr> - <td style="width: 33%" valign="top"><dl> - - <dt><a href="astra.html#astra.astra.set_gpu_index">set_gpu_index() (in module astra.astra)</a> - 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\ No newline at end of file diff --git a/python/docSRC/_build/html/matlab.html b/python/docSRC/_build/html/matlab.html deleted file mode 100644 index 8b4bf31..0000000 --- a/python/docSRC/_build/html/matlab.html +++ /dev/null @@ -1,184 +0,0 @@ -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" - "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> - - -<html xmlns="http://www.w3.org/1999/xhtml"> - <head> - <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> - - <title>MATLAB compatibility interface: the matlab module — PyASTRAToolbox 1.6 documentation</title> - - <link rel="stylesheet" href="_static/default.css" type="text/css" /> - <link rel="stylesheet" href="_static/pygments.css" type="text/css" /> - - <script type="text/javascript"> - var DOCUMENTATION_OPTIONS = { - URL_ROOT: './', - VERSION: '1.6', - COLLAPSE_INDEX: false, - FILE_SUFFIX: '.html', - HAS_SOURCE: true - }; - </script> - <script type="text/javascript" src="_static/jquery.js"></script> - <script type="text/javascript" src="_static/underscore.js"></script> - <script type="text/javascript" src="_static/doctools.js"></script> - <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script> - <link rel="top" title="PyASTRAToolbox 1.6 documentation" href="index.html" /> - <link rel="next" title="Additional ASTRA methods: the astra module" href="astra.html" /> - <link rel="prev" title="Helper class: the ASTRAProjector module" href="ASTRAProjector.html" /> - </head> - <body> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="genindex.html" title="General Index" - accesskey="I">index</a></li> - <li class="right" > - <a href="py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li class="right" > - <a href="astra.html" title="Additional ASTRA methods: the astra module" - accesskey="N">next</a> |</li> - <li class="right" > - <a href="ASTRAProjector.html" title="Helper class: the ASTRAProjector module" - accesskey="P">previous</a> |</li> - <li><a href="index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - </ul> - </div> - - <div class="document"> - <div class="documentwrapper"> - <div class="bodywrapper"> - <div class="body"> - - <div class="section" id="module-astra.matlab"> -<span id="matlab-compatibility-interface-the-matlab-module"></span><h1>MATLAB compatibility interface: the <tt class="xref py py-mod docutils literal"><span class="pre">matlab</span></tt> module<a class="headerlink" href="#module-astra.matlab" title="Permalink to this headline">¶</a></h1> -<p>This module implements a MATLAB-like interface to the ASTRA Toolbox.</p> -<p>Note that all functions are called with a <tt class="xref py py-class docutils literal"><span class="pre">string</span></tt> as the first -argument, specifying the operation to perform. This un-pythonic way -is used to make transitioning from MATLAB code to Python code easier, as -the MATLAB interface uses the same type of method calling.</p> -<p>After an initial <tt class="docutils literal"><span class="pre">import</span> <span class="pre">astra</span></tt>, these functions can be accessed in the -<tt class="docutils literal"><span class="pre">astra.m</span></tt> module.</p> -<dl class="function"> -<dt id="astra.matlab.algorithm"> -<tt class="descclassname">astra.matlab.</tt><tt class="descname">algorithm</tt><big>(</big><em>command</em>, <em>*args</em><big>)</big><a class="reference internal" href="_modules/astra/matlab.html#algorithm"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matlab.algorithm" title="Permalink to this definition">¶</a></dt> -<dd><p>MATLAB-like interface to the <a class="reference internal" href="algorithm.html#module-astra.algorithm" title="astra.algorithm"><tt class="xref py py-mod docutils literal"><span class="pre">astra.algorithm</span></tt></a> module</p> -<p>For example:</p> -<p><tt class="docutils literal"><span class="pre">astra.m.algorithm('run',i,1000)</span></tt> – Run an algorithm with 1000 iterations.</p> -</dd></dl> - -<dl class="function"> -<dt id="astra.matlab.astra"> -<tt class="descclassname">astra.matlab.</tt><tt class="descname">astra</tt><big>(</big><em>command</em>, <em>*args</em><big>)</big><a class="reference internal" href="_modules/astra/matlab.html#astra"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matlab.astra" title="Permalink to this definition">¶</a></dt> -<dd><p>MATLAB-like interface to the <a class="reference internal" href="astra.html#module-astra.astra" title="astra.astra"><tt class="xref py py-mod docutils literal"><span class="pre">astra.astra</span></tt></a> module</p> -<p>For example:</p> -<p><tt class="docutils literal"><span class="pre">astra.m.astra('use_cuda')</span></tt> – Check if CUDA is enabled.</p> -</dd></dl> - -<dl class="function"> -<dt id="astra.matlab.data2d"> -<tt class="descclassname">astra.matlab.</tt><tt class="descname">data2d</tt><big>(</big><em>command</em>, <em>*args</em><big>)</big><a class="reference internal" href="_modules/astra/matlab.html#data2d"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matlab.data2d" title="Permalink to this definition">¶</a></dt> -<dd><p>MATLAB-like interface to the <a class="reference internal" href="data2d.html#module-astra.data2d" title="astra.data2d"><tt class="xref py py-mod docutils literal"><span class="pre">astra.data2d</span></tt></a> module</p> -<p>For example:</p> -<p><tt class="docutils literal"><span class="pre">astra.m.data2d('create',type,geometry,data)</span></tt> – Create a 2D object.</p> -</dd></dl> - -<dl class="function"> -<dt id="astra.matlab.data3d"> -<tt class="descclassname">astra.matlab.</tt><tt class="descname">data3d</tt><big>(</big><em>command</em>, <em>*args</em><big>)</big><a class="reference internal" href="_modules/astra/matlab.html#data3d"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matlab.data3d" title="Permalink to this definition">¶</a></dt> -<dd><p>MATLAB-like interface to the <a class="reference internal" href="data3d.html#module-astra.data3d" title="astra.data3d"><tt class="xref py py-mod docutils literal"><span class="pre">astra.data3d</span></tt></a> module</p> -<p>For example:</p> -<p><tt class="docutils literal"><span class="pre">astra.m.data3d('get',i)</span></tt> – Get 3D object data.</p> -</dd></dl> - -<dl class="function"> -<dt id="astra.matlab.matrix"> -<tt class="descclassname">astra.matlab.</tt><tt class="descname">matrix</tt><big>(</big><em>command</em>, <em>*args</em><big>)</big><a class="reference internal" href="_modules/astra/matlab.html#matrix"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matlab.matrix" title="Permalink to this definition">¶</a></dt> -<dd><p>MATLAB-like interface to the <a class="reference internal" href="matrix.html#module-astra.matrix" title="astra.matrix"><tt class="xref py py-mod docutils literal"><span class="pre">astra.matrix</span></tt></a> module</p> -<p>For example:</p> -<p><tt class="docutils literal"><span class="pre">astra.m.matrix('delete',i)</span></tt> – Delete a matrix.</p> -</dd></dl> - -<dl class="function"> -<dt id="astra.matlab.projector"> -<tt class="descclassname">astra.matlab.</tt><tt class="descname">projector</tt><big>(</big><em>command</em>, <em>*args</em><big>)</big><a class="reference internal" href="_modules/astra/matlab.html#projector"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matlab.projector" title="Permalink to this definition">¶</a></dt> -<dd><p>MATLAB-like interface to the <a class="reference internal" href="projector.html#module-astra.projector" title="astra.projector"><tt class="xref py py-mod docutils literal"><span class="pre">astra.projector</span></tt></a> module</p> -<p>For example:</p> -<p><tt class="docutils literal"><span class="pre">astra.m.projector('volume_geometry',i)</span></tt> – Get volume geometry.</p> -</dd></dl> - -</div> - - - </div> - </div> - </div> - <div class="sphinxsidebar"> - <div class="sphinxsidebarwrapper"> - <h4>Previous topic</h4> - <p class="topless"><a href="ASTRAProjector.html" - title="previous chapter">Helper class: the <tt class="docutils literal"><span class="pre">ASTRAProjector</span></tt> module</a></p> - <h4>Next topic</h4> - <p class="topless"><a href="astra.html" - title="next chapter">Additional ASTRA methods: the <tt class="docutils literal"><span class="pre">astra</span></tt> module</a></p> - <h3>This Page</h3> - <ul class="this-page-menu"> - <li><a href="_sources/matlab.txt" - rel="nofollow">Show Source</a></li> - </ul> -<div id="searchbox" style="display: none"> - <h3>Quick search</h3> - <form class="search" action="search.html" method="get"> - <input type="text" name="q" /> - <input type="submit" value="Go" /> - <input type="hidden" name="check_keywords" value="yes" /> - <input type="hidden" name="area" value="default" /> - </form> - <p class="searchtip" style="font-size: 90%"> - Enter search terms or a module, class or function name. - </p> -</div> -<script type="text/javascript">$('#searchbox').show(0);</script> - </div> - </div> - <div class="clearer"></div> - 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\ No newline at end of file diff --git a/python/docSRC/_build/html/matrix.html b/python/docSRC/_build/html/matrix.html deleted file mode 100644 index 1df4c30..0000000 --- a/python/docSRC/_build/html/matrix.html +++ /dev/null @@ -1,221 +0,0 @@ -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" - "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> - - -<html xmlns="http://www.w3.org/1999/xhtml"> - <head> - <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> - - <title>Sparse matrices: the matrix module — PyASTRAToolbox 1.6 documentation</title> - - <link rel="stylesheet" href="_static/default.css" type="text/css" /> - <link rel="stylesheet" href="_static/pygments.css" type="text/css" /> - - <script type="text/javascript"> - var DOCUMENTATION_OPTIONS = { - URL_ROOT: './', - VERSION: '1.6', - COLLAPSE_INDEX: false, - FILE_SUFFIX: '.html', - HAS_SOURCE: true - }; - </script> - <script type="text/javascript" src="_static/jquery.js"></script> - <script type="text/javascript" src="_static/underscore.js"></script> - <script type="text/javascript" src="_static/doctools.js"></script> - <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script> - <link rel="top" title="PyASTRAToolbox 1.6 documentation" href="index.html" /> - <link rel="next" title="Creation of objects: the creators module" href="creators.html" /> - <link rel="prev" title="Algorithms: the algorithm module" href="algorithm.html" /> - </head> - <body> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="genindex.html" title="General Index" - accesskey="I">index</a></li> - <li class="right" > - <a href="py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li class="right" > - <a href="creators.html" title="Creation of objects: the creators module" - accesskey="N">next</a> |</li> - <li class="right" > - <a href="algorithm.html" title="Algorithms: the algorithm module" - accesskey="P">previous</a> |</li> - <li><a href="index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - </ul> - </div> - - <div class="document"> - <div class="documentwrapper"> - <div class="bodywrapper"> - <div class="body"> - - <div class="section" id="module-astra.matrix"> -<span id="sparse-matrices-the-matrix-module"></span><h1>Sparse matrices: the <tt class="xref py py-mod docutils literal"><span class="pre">matrix</span></tt> module<a class="headerlink" href="#module-astra.matrix" title="Permalink to this headline">¶</a></h1> -<dl class="function"> -<dt id="astra.matrix.clear"> -<tt class="descclassname">astra.matrix.</tt><tt class="descname">clear</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/matrix.html#clear"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matrix.clear" title="Permalink to this definition">¶</a></dt> -<dd><p>Clear all matrix objects.</p> -</dd></dl> - -<dl class="function"> -<dt id="astra.matrix.create"> -<tt class="descclassname">astra.matrix.</tt><tt class="descname">create</tt><big>(</big><em>data</em><big>)</big><a class="reference internal" href="_modules/astra/matrix.html#create"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matrix.create" title="Permalink to this definition">¶</a></dt> -<dd><p>Create matrix object with data.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>data</strong> (<tt class="xref py py-class docutils literal"><span class="pre">scipy.sparse.csr_matrix</span></tt>) – Data to fill the created object with.</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> – the ID of the constructed object.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.matrix.delete"> -<tt class="descclassname">astra.matrix.</tt><tt class="descname">delete</tt><big>(</big><em>ids</em><big>)</big><a class="reference internal" href="_modules/astra/matrix.html#delete"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matrix.delete" title="Permalink to this definition">¶</a></dt> -<dd><p>Delete a matrix object.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>ids</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#list" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">list</span></tt></a>) – ID or list of ID’s to delete.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.matrix.get"> -<tt class="descclassname">astra.matrix.</tt><tt class="descname">get</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/matrix.html#get"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matrix.get" title="Permalink to this definition">¶</a></dt> -<dd><p>Get a matrix object.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of object to get.</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><tt class="xref py py-class docutils literal"><span class="pre">scipy.sparse.csr_matrix</span></tt> – The object data.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.matrix.get_size"> -<tt class="descclassname">astra.matrix.</tt><tt class="descname">get_size</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/matrix.html#get_size"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matrix.get_size" title="Permalink to this definition">¶</a></dt> -<dd><p>Get matrix dimensions.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of object.</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><tt class="xref py py-class docutils literal"><span class="pre">tuple</span></tt> – matrix dimensions.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.matrix.info"> -<tt class="descclassname">astra.matrix.</tt><tt class="descname">info</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/matrix.html#info"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matrix.info" title="Permalink to this definition">¶</a></dt> -<dd><p>Print info on matrix objects in memory.</p> -</dd></dl> - -<dl class="function"> -<dt id="astra.matrix.store"> -<tt class="descclassname">astra.matrix.</tt><tt class="descname">store</tt><big>(</big><em>i</em>, <em>data</em><big>)</big><a class="reference internal" href="_modules/astra/matrix.html#store"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.matrix.store" title="Permalink to this definition">¶</a></dt> -<dd><p>Fill existing matrix object with data.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple"> -<li><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of object to fill.</li> -<li><strong>data</strong> (<tt class="xref py py-class docutils literal"><span class="pre">scipy.sparse.csr_matrix</span></tt>) – Data to fill the object with.</li> -</ul> -</td> -</tr> -</tbody> -</table> -</dd></dl> - 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\ No newline at end of file diff --git a/python/docSRC/_build/html/objects.inv b/python/docSRC/_build/html/objects.inv Binary files differdeleted file mode 100644 index 54bab0b..0000000 --- a/python/docSRC/_build/html/objects.inv +++ /dev/null diff --git a/python/docSRC/_build/html/projector.html b/python/docSRC/_build/html/projector.html deleted file mode 100644 index 9df5d0b..0000000 --- a/python/docSRC/_build/html/projector.html +++ /dev/null @@ -1,234 +0,0 @@ -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" - "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> - - -<html xmlns="http://www.w3.org/1999/xhtml"> - <head> - <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> - - <title>Projector object: the projector module — PyASTRAToolbox 1.6 documentation</title> - - <link rel="stylesheet" href="_static/default.css" type="text/css" /> - <link rel="stylesheet" href="_static/pygments.css" type="text/css" /> - - <script type="text/javascript"> - var DOCUMENTATION_OPTIONS = { - 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<li class="right" > - <a href="algorithm.html" title="Algorithms: the algorithm module" - accesskey="N">next</a> |</li> - <li class="right" > - <a href="data3d.html" title="3D data objects: the data3d module" - accesskey="P">previous</a> |</li> - <li><a href="index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - </ul> - </div> - - <div class="document"> - <div class="documentwrapper"> - <div class="bodywrapper"> - <div class="body"> - - <div class="section" id="module-astra.projector"> -<span id="projector-object-the-projector-module"></span><h1>Projector object: the <tt class="xref py py-mod docutils literal"><span class="pre">projector</span></tt> module<a class="headerlink" href="#module-astra.projector" title="Permalink to this headline">¶</a></h1> -<dl class="function"> -<dt id="astra.projector.clear"> -<tt class="descclassname">astra.projector.</tt><tt class="descname">clear</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/projector.html#clear"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.projector.clear" title="Permalink to this definition">¶</a></dt> -<dd><p>Clear all projector objects.</p> -</dd></dl> - -<dl class="function"> -<dt id="astra.projector.create"> -<tt class="descclassname">astra.projector.</tt><tt class="descname">create</tt><big>(</big><em>config</em><big>)</big><a class="reference internal" href="_modules/astra/projector.html#create"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.projector.create" title="Permalink to this definition">¶</a></dt> -<dd><p>Create projector object.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>config</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a>) – Projector options.</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> – the ID of the constructed object.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.projector.delete"> -<tt class="descclassname">astra.projector.</tt><tt class="descname">delete</tt><big>(</big><em>ids</em><big>)</big><a class="reference internal" href="_modules/astra/projector.html#delete"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.projector.delete" title="Permalink to this definition">¶</a></dt> -<dd><p>Delete a projector object.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>ids</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> or <a class="reference external" href="http://docs.python.org/2.7/library/functions.html#list" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">list</span></tt></a>) – ID or list of ID’s to delete.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.projector.info"> -<tt class="descclassname">astra.projector.</tt><tt class="descname">info</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/astra/projector.html#info"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.projector.info" title="Permalink to this definition">¶</a></dt> -<dd><p>Print info on projector objects in memory.</p> -</dd></dl> - -<dl class="function"> -<dt id="astra.projector.matrix"> -<tt class="descclassname">astra.projector.</tt><tt class="descname">matrix</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/projector.html#matrix"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.projector.matrix" title="Permalink to this definition">¶</a></dt> -<dd><p>Get sparse matrix of a projector.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of projector.</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a> – ID of sparse matrix.</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.projector.projection_geometry"> -<tt class="descclassname">astra.projector.</tt><tt class="descname">projection_geometry</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/projector.html#projection_geometry"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.projector.projection_geometry" title="Permalink to this definition">¶</a></dt> -<dd><p>Get projection geometry of a projector.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of projector.</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a> – projection geometry</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.projector.splat"> -<tt class="descclassname">astra.projector.</tt><tt class="descname">splat</tt><big>(</big><em>i</em>, <em>row</em>, <em>col</em><big>)</big><a class="reference internal" href="_modules/astra/projector.html#splat"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.projector.splat" title="Permalink to this definition">¶</a></dt> -<dd></dd></dl> - -<dl class="function"> -<dt id="astra.projector.volume_geometry"> -<tt class="descclassname">astra.projector.</tt><tt class="descname">volume_geometry</tt><big>(</big><em>i</em><big>)</big><a class="reference internal" href="_modules/astra/projector.html#volume_geometry"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.projector.volume_geometry" title="Permalink to this definition">¶</a></dt> -<dd><p>Get volume geometry of a projector.</p> -<table class="docutils field-list" frame="void" rules="none"> -<col class="field-name" /> -<col class="field-body" /> -<tbody valign="top"> -<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>i</strong> (<a class="reference external" href="http://docs.python.org/2.7/library/functions.html#int" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">int</span></tt></a>) – ID of projector.</td> -</tr> -<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><a class="reference external" href="http://docs.python.org/2.7/library/stdtypes.html#dict" title="(in Python v2.7)"><tt class="xref py py-class docutils literal"><span class="pre">dict</span></tt></a> – volume geometry</td> -</tr> -</tbody> -</table> -</dd></dl> - -<dl class="function"> -<dt id="astra.projector.weights_projection"> -<tt class="descclassname">astra.projector.</tt><tt class="descname">weights_projection</tt><big>(</big><em>i</em>, <em>projection_index</em><big>)</big><a class="reference internal" href="_modules/astra/projector.html#weights_projection"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.projector.weights_projection" title="Permalink to this definition">¶</a></dt> -<dd></dd></dl> - -<dl class="function"> -<dt id="astra.projector.weights_single_ray"> -<tt class="descclassname">astra.projector.</tt><tt class="descname">weights_single_ray</tt><big>(</big><em>i</em>, <em>projection_index</em>, <em>detector_index</em><big>)</big><a class="reference internal" href="_modules/astra/projector.html#weights_single_ray"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#astra.projector.weights_single_ray" title="Permalink to this definition">¶</a></dt> -<dd></dd></dl> - -</div> - 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\ No newline at end of file diff --git a/python/docSRC/_build/html/search.html b/python/docSRC/_build/html/search.html deleted file mode 100644 index ac8ee73..0000000 --- a/python/docSRC/_build/html/search.html +++ /dev/null @@ -1,118 +0,0 @@ -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" - "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> - - -<html xmlns="http://www.w3.org/1999/xhtml"> - <head> - <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> - - <title>Search — PyASTRAToolbox 1.6 documentation</title> - - <link rel="stylesheet" href="_static/default.css" type="text/css" /> - <link rel="stylesheet" href="_static/pygments.css" type="text/css" /> - - <script type="text/javascript"> - var DOCUMENTATION_OPTIONS = { - URL_ROOT: './', - VERSION: '1.6', - COLLAPSE_INDEX: false, - FILE_SUFFIX: '.html', - HAS_SOURCE: true - }; - </script> - <script type="text/javascript" src="_static/jquery.js"></script> - <script type="text/javascript" src="_static/underscore.js"></script> - <script type="text/javascript" src="_static/doctools.js"></script> - <script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script> - <script type="text/javascript" src="_static/searchtools.js"></script> - <link rel="top" title="PyASTRAToolbox 1.6 documentation" href="index.html" /> - <script type="text/javascript"> - jQuery(function() { Search.loadIndex("searchindex.js"); }); - </script> - - <script type="text/javascript" id="searchindexloader"></script> - - - </head> - <body> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="genindex.html" title="General Index" - accesskey="I">index</a></li> - <li class="right" > - <a href="py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li><a href="index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - </ul> - </div> - - <div class="document"> - <div class="documentwrapper"> - <div class="bodywrapper"> - <div class="body"> - - <h1 id="search-documentation">Search</h1> - <div id="fallback" class="admonition warning"> - <script type="text/javascript">$('#fallback').hide();</script> - <p> - Please activate JavaScript to enable the search - functionality. - </p> - </div> - <p> - From here you can search these documents. Enter your search - words into the box below and click "search". Note that the search - function will automatically search for all of the words. Pages - containing fewer words won't appear in the result list. - </p> - <form action="" method="get"> - <input type="text" name="q" value="" /> - <input type="submit" value="search" /> - <span id="search-progress" style="padding-left: 10px"></span> - </form> - - <div id="search-results"> - - </div> - - </div> - </div> - </div> - <div class="sphinxsidebar"> - <div class="sphinxsidebarwrapper"> - </div> - </div> - <div class="clearer"></div> - </div> - <div class="related"> - <h3>Navigation</h3> - <ul> - <li class="right" style="margin-right: 10px"> - <a href="genindex.html" title="General Index" - >index</a></li> - <li class="right" > - <a href="py-modindex.html" title="Python Module Index" - >modules</a> |</li> - <li><a href="index.html">PyASTRAToolbox 1.6 documentation</a> »</li> - </ul> - </div> - - <div class="footer"> - © Copyright 2013, Centrum Wiskunde & Informatica, Amsterdam. - Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3. - </div> -<script> - (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ - (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), - m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) - })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); - - ga('create', 'UA-40340335-1', 'dmpelt.github.io'); - ga('send', 'pageview'); - -</script> - - </body> -</html>
\ No newline at end of file diff --git a/python/docSRC/_build/html/searchindex.js b/python/docSRC/_build/html/searchindex.js deleted file mode 100644 index cc69a68..0000000 --- a/python/docSRC/_build/html/searchindex.js +++ /dev/null @@ -1 +0,0 @@ -Search.setIndex({objtypes:{"0":"py:module","1":"py:function","2":"py:method","3":"py:class"},objnames:{"0":["py","module","Python module"],"1":["py","function","Python function"],"2":["py","method","Python method"],"3":["py","class","Python 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\ No newline at end of file diff --git a/python/docSRC/_templates/layout.html b/python/docSRC/_templates/layout.html deleted file mode 100644 index f30df11..0000000 --- a/python/docSRC/_templates/layout.html +++ /dev/null @@ -1,15 +0,0 @@ -{% extends "!layout.html" %} - -{% block footer %} -{{ super() }} -<script> - (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ - (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), - m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) - })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); - - ga('create', 'UA-40340335-1', 'dmpelt.github.io'); - ga('send', 'pageview'); - -</script> -{% endblock %} diff --git a/python/docSRC/algorithm.rst b/python/docSRC/algorithm.rst deleted file mode 100644 index 83752bd..0000000 --- a/python/docSRC/algorithm.rst +++ /dev/null @@ -1,8 +0,0 @@ -Algorithms: the :mod:`algorithm` module -======================================= - -.. automodule:: astra.algorithm - :members: - :undoc-members: - :show-inheritance: - diff --git a/python/docSRC/astra.rst b/python/docSRC/astra.rst deleted file mode 100644 index 5d5fdf0..0000000 --- a/python/docSRC/astra.rst +++ /dev/null @@ -1,8 +0,0 @@ -Additional ASTRA methods: the :mod:`astra` module -======================================================== - -.. automodule:: astra.astra - :members: - :undoc-members: - :show-inheritance: - diff --git a/python/docSRC/conf.py b/python/docSRC/conf.py deleted file mode 100644 index 78f7d42..0000000 --- a/python/docSRC/conf.py +++ /dev/null @@ -1,287 +0,0 @@ -# -*- coding: utf-8 -*- -# -# .. documentation build configuration file, created by -# sphinx-quickstart on Wed Mar 13 16:36:32 2013. -# -# This file is execfile()d with the current directory set to its containing dir. -# -# Note that not all possible configuration values are present in this -# autogenerated file. -# -# All configuration values have a default; values that are commented out -# serve to show the default. - -import sys, os - -# If extensions (or modules to document with autodoc) are in another directory, -# add these directories to sys.path here. If the directory is relative to the -# documentation root, use os.path.abspath to make it absolute, like shown here. -#sys.path.insert(0, os.path.abspath('.')) - -# -- General configuration ----------------------------------------------------- - -# If your documentation needs a minimal Sphinx version, state it here. -#needs_sphinx = '1.0' - -# Add any Sphinx extension module names here, as strings. They can be extensions -# coming with Sphinx (named 'sphinx.ext.*') or your custom ones. -extensions = ['sphinx.ext.autodoc', 'sphinx.ext.viewcode','sphinx.ext.mathjax','sphinx.ext.intersphinx'] - -# Add any paths that contain templates here, relative to this directory. -templates_path = ['_templates'] - -# The suffix of source filenames. -source_suffix = '.rst' - -# The encoding of source files. -#source_encoding = 'utf-8-sig' - -# The master toctree document. -master_doc = 'index' - -# General information about the project. -project = u'PyASTRAToolbox' -copyright = u'2013, Centrum Wiskunde & Informatica, Amsterdam' - -# The version info for the project you're documenting, acts as replacement for -# |version| and |release|, also used in various other places throughout the -# built documents. -# -# The short X.Y version. -version = '1.7.1' -# The full version, including alpha/beta/rc tags. -release = '1.7.1' - -# The language for content autogenerated by Sphinx. Refer to documentation -# for a list of supported languages. -#language = None - -# There are two options for replacing |today|: either, you set today to some -# non-false value, then it is used: -#today = '' -# Else, today_fmt is used as the format for a strftime call. -#today_fmt = '%B %d, %Y' - -# List of patterns, relative to source directory, that match files and -# directories to ignore when looking for source files. -exclude_patterns = ['_build'] - -# The reST default role (used for this markup: `text`) to use for all documents. -#default_role = None - -# If true, '()' will be appended to :func: etc. cross-reference text. -#add_function_parentheses = True - -# If true, the current module name will be prepended to all description -# unit titles (such as .. function::). -#add_module_names = True - -# If true, sectionauthor and moduleauthor directives will be shown in the -# output. They are ignored by default. -#show_authors = False - -# The name of the Pygments (syntax highlighting) style to use. -pygments_style = 'sphinx' - -# A list of ignored prefixes for module index sorting. -#modindex_common_prefix = [] - - -# -- Options for HTML output --------------------------------------------------- - -# The theme to use for HTML and HTML Help pages. See the documentation for -# a list of builtin themes. -html_theme = 'default' - -# Theme options are theme-specific and customize the look and feel of a theme -# further. For a list of options available for each theme, see the -# documentation. -#html_theme_options = {} - -# Add any paths that contain custom themes here, relative to this directory. -#html_theme_path = [] - -# The name for this set of Sphinx documents. If None, it defaults to -# "<project> v<release> documentation". -#html_title = None - -# A shorter title for the navigation bar. Default is the same as html_title. -#html_short_title = None - -# The name of an image file (relative to this directory) to place at the top -# of the sidebar. -#html_logo = None - -# The name of an image file (within the static path) to use as favicon of the -# docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 -# pixels large. -#html_favicon = None - -# Add any paths that contain custom static files (such as style sheets) here, -# relative to this directory. They are copied after the builtin static files, -# so a file named "default.css" will overwrite the builtin "default.css". -html_static_path = ['_static'] - -# If not '', a 'Last updated on:' timestamp is inserted at every page bottom, -# using the given strftime format. -#html_last_updated_fmt = '%b %d, %Y' - -# If true, SmartyPants will be used to convert quotes and dashes to -# typographically correct entities. -#html_use_smartypants = True - -# Custom sidebar templates, maps document names to template names. -#html_sidebars = {} - -# Additional templates that should be rendered to pages, maps page names to -# template names. -#html_additional_pages = {} - -# If false, no module index is generated. -#html_domain_indices = True - -# If false, no index is generated. -#html_use_index = True - -# If true, the index is split into individual pages for each letter. -#html_split_index = False - -# If true, links to the reST sources are added to the pages. -#html_show_sourcelink = True - -# If true, "Created using Sphinx" is shown in the HTML footer. Default is True. -#html_show_sphinx = True - -# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. -#html_show_copyright = True - -# If true, an OpenSearch description file will be output, and all pages will -# contain a <link> tag referring to it. The value of this option must be the -# base URL from which the finished HTML is served. -#html_use_opensearch = '' - -# This is the file name suffix for HTML files (e.g. ".xhtml"). -#html_file_suffix = None - -# Output file base name for HTML help builder. -htmlhelp_basename = 'doc' - - -# -- Options for LaTeX output -------------------------------------------------- - -latex_elements = { -# The paper size ('letterpaper' or 'a4paper'). -#'papersize': 'letterpaper', - -# The font size ('10pt', '11pt' or '12pt'). -#'pointsize': '10pt', - -# Additional stuff for the LaTeX preamble. -#'preamble': '', -} - -# Grouping the document tree into LaTeX files. List of tuples -# (source start file, target name, title, author, documentclass [howto/manual]). -latex_documents = [ - ('index', '.tex', u'.. Documentation', - u'Author', 'manual'), -] - -# The name of an image file (relative to this directory) to place at the top of -# the title page. -#latex_logo = None - -# For "manual" documents, if this is true, then toplevel headings are parts, -# not chapters. -#latex_use_parts = False - -# If true, show page references after internal links. -#latex_show_pagerefs = False - -# If true, show URL addresses after external links. -#latex_show_urls = False - -# Documents to append as an appendix to all manuals. -#latex_appendices = [] - -# If false, no module index is generated. -#latex_domain_indices = True - - -# -- Options for manual page output -------------------------------------------- - -# One entry per manual page. List of tuples -# (source start file, name, description, authors, manual section). -man_pages = [ - ('index', '', u'.. Documentation', - [u'Author'], 1) -] - -# If true, show URL addresses after external links. -#man_show_urls = False - - -# -- Options for Texinfo output ------------------------------------------------ - -# Grouping the document tree into Texinfo files. List of tuples -# (source start file, target name, title, author, -# dir menu entry, description, category) -texinfo_documents = [ - ('index', '', u'.. Documentation', - u'Author', '', 'One line description of project.', - 'Miscellaneous'), -] - -# Documents to append as an appendix to all manuals. -#texinfo_appendices = [] - -# If false, no module index is generated. -#texinfo_domain_indices = True - -# How to display URL addresses: 'footnote', 'no', or 'inline'. -#texinfo_show_urls = 'footnote' - - -# -- Options for Epub output --------------------------------------------------- - -# Bibliographic Dublin Core info. -epub_title = u'..' -epub_author = u'Author' -epub_publisher = u'Author' -epub_copyright = u'2013, Author' - -# The language of the text. It defaults to the language option -# or en if the language is not set. -#epub_language = '' - -# The scheme of the identifier. Typical schemes are ISBN or URL. -#epub_scheme = '' - -# The unique identifier of the text. This can be a ISBN number -# or the project homepage. -#epub_identifier = '' - -# A unique identification for the text. -#epub_uid = '' - -# A tuple containing the cover image and cover page html template filenames. -#epub_cover = () - -# HTML files that should be inserted before the pages created by sphinx. -# The format is a list of tuples containing the path and title. -#epub_pre_files = [] - -# HTML files shat should be inserted after the pages created by sphinx. -# The format is a list of tuples containing the path and title. -#epub_post_files = [] - -# A list of files that should not be packed into the epub file. -#epub_exclude_files = [] - -# The depth of the table of contents in toc.ncx. -#epub_tocdepth = 3 - -# Allow duplicate toc entries. -#epub_tocdup = True - -intersphinx_mapping = {'python': ('http://docs.python.org/2.7', None), 'numpy':('http://docs.scipy.org/doc/numpy/',None)} diff --git a/python/docSRC/creators.rst b/python/docSRC/creators.rst deleted file mode 100644 index d6249c3..0000000 --- a/python/docSRC/creators.rst +++ /dev/null @@ -1,8 +0,0 @@ -Creation of objects: the :mod:`creators` module -=============================================== - -.. automodule:: astra.creators - :members: - :undoc-members: - :show-inheritance: - diff --git a/python/docSRC/data2d.rst b/python/docSRC/data2d.rst deleted file mode 100644 index 342cbec..0000000 --- a/python/docSRC/data2d.rst +++ /dev/null @@ -1,8 +0,0 @@ -2D data objects: the :mod:`data2d` module -========================================= - -.. automodule:: astra.data2d - :members: - :undoc-members: - :show-inheritance: - diff --git a/python/docSRC/data3d.rst b/python/docSRC/data3d.rst deleted file mode 100644 index 5b7de23..0000000 --- a/python/docSRC/data3d.rst +++ /dev/null @@ -1,8 +0,0 @@ -3D data objects: the :mod:`data3d` module -========================================= - -.. automodule:: astra.data3d - :members: - :undoc-members: - :show-inheritance: - diff --git a/python/docSRC/functions.rst b/python/docSRC/functions.rst deleted file mode 100644 index 749eb27..0000000 --- a/python/docSRC/functions.rst +++ /dev/null @@ -1,8 +0,0 @@ -Additional functions: the :mod:`functions` module -================================================= - -.. automodule:: astra.functions - :members: - :undoc-members: - :show-inheritance: - diff --git a/python/docSRC/index.rst b/python/docSRC/index.rst deleted file mode 100644 index dcc6590..0000000 --- a/python/docSRC/index.rst +++ /dev/null @@ -1,35 +0,0 @@ -.. .. documentation master file, created by - sphinx-quickstart on Wed Mar 13 16:36:32 2013. - You can adapt this file completely to your liking, but it should at least - contain the root `toctree` directive. - -Welcome to PyASTRAToolbox's documentation! -========================================== - -Contents: - -.. toctree:: - :maxdepth: 4 - - data2d - data3d - projector - algorithm - matrix - creators - functions - operator - plugins - matlab - astra -.. astra -.. builder - - -Indices and tables -================== - -* :ref:`genindex` -* :ref:`modindex` -* :ref:`search` - diff --git a/python/docSRC/make.bat b/python/docSRC/make.bat deleted file mode 100644 index d70c604..0000000 --- a/python/docSRC/make.bat +++ /dev/null @@ -1,190 +0,0 @@ -@ECHO OFF - -REM Command file for Sphinx documentation - -if "%SPHINXBUILD%" == "" ( - set SPHINXBUILD=sphinx-build -) -set BUILDDIR=_build -set ALLSPHINXOPTS=-d %BUILDDIR%/doctrees %SPHINXOPTS% . -set I18NSPHINXOPTS=%SPHINXOPTS% . -if NOT "%PAPER%" == "" ( - set ALLSPHINXOPTS=-D latex_paper_size=%PAPER% %ALLSPHINXOPTS% - set I18NSPHINXOPTS=-D latex_paper_size=%PAPER% %I18NSPHINXOPTS% -) - -if "%1" == "" goto help - -if "%1" == "help" ( - :help - echo.Please use `make ^<target^>` where ^<target^> is one of - echo. html to make standalone HTML files - echo. dirhtml to make HTML files named index.html in directories - echo. singlehtml to make a single large HTML file - echo. pickle to make pickle files - echo. json to make JSON files - echo. htmlhelp to make HTML files and a HTML help project - echo. qthelp to make HTML files and a qthelp project - echo. devhelp to make HTML files and a Devhelp project - echo. epub to make an epub - echo. latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter - echo. text to make text files - echo. man to make manual pages - echo. texinfo to make Texinfo files - echo. gettext to make PO message catalogs - echo. changes to make an overview over all changed/added/deprecated items - echo. linkcheck to check all external links for integrity - echo. doctest to run all doctests embedded in the documentation if enabled - goto end -) - -if "%1" == "clean" ( - for /d %%i in (%BUILDDIR%\*) do rmdir /q /s %%i - del /q /s %BUILDDIR%\* - goto end -) - -if "%1" == "html" ( - %SPHINXBUILD% -b html %ALLSPHINXOPTS% %BUILDDIR%/html - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The HTML pages are in %BUILDDIR%/html. - goto end -) - -if "%1" == "dirhtml" ( - %SPHINXBUILD% -b dirhtml %ALLSPHINXOPTS% %BUILDDIR%/dirhtml - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The HTML pages are in %BUILDDIR%/dirhtml. - goto end -) - -if "%1" == "singlehtml" ( - %SPHINXBUILD% -b singlehtml %ALLSPHINXOPTS% %BUILDDIR%/singlehtml - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The HTML pages are in %BUILDDIR%/singlehtml. - goto end -) - -if "%1" == "pickle" ( - %SPHINXBUILD% -b pickle %ALLSPHINXOPTS% %BUILDDIR%/pickle - if errorlevel 1 exit /b 1 - echo. - echo.Build finished; now you can process the pickle files. - goto end -) - -if "%1" == "json" ( - %SPHINXBUILD% -b json %ALLSPHINXOPTS% %BUILDDIR%/json - if errorlevel 1 exit /b 1 - echo. - echo.Build finished; now you can process the JSON files. - goto end -) - -if "%1" == "htmlhelp" ( - %SPHINXBUILD% -b htmlhelp %ALLSPHINXOPTS% %BUILDDIR%/htmlhelp - if errorlevel 1 exit /b 1 - echo. - echo.Build finished; now you can run HTML Help Workshop with the ^ -.hhp project file in %BUILDDIR%/htmlhelp. - goto end -) - -if "%1" == "qthelp" ( - %SPHINXBUILD% -b qthelp %ALLSPHINXOPTS% %BUILDDIR%/qthelp - if errorlevel 1 exit /b 1 - echo. - echo.Build finished; now you can run "qcollectiongenerator" with the ^ -.qhcp project file in %BUILDDIR%/qthelp, like this: - echo.^> qcollectiongenerator %BUILDDIR%\qthelp\.qhcp - echo.To view the help file: - echo.^> assistant -collectionFile %BUILDDIR%\qthelp\.ghc - goto end -) - -if "%1" == "devhelp" ( - %SPHINXBUILD% -b devhelp %ALLSPHINXOPTS% %BUILDDIR%/devhelp - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. - goto end -) - -if "%1" == "epub" ( - %SPHINXBUILD% -b epub %ALLSPHINXOPTS% %BUILDDIR%/epub - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The epub file is in %BUILDDIR%/epub. - goto end -) - -if "%1" == "latex" ( - %SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex - if errorlevel 1 exit /b 1 - echo. - echo.Build finished; the LaTeX files are in %BUILDDIR%/latex. - goto end -) - -if "%1" == "text" ( - %SPHINXBUILD% -b text %ALLSPHINXOPTS% %BUILDDIR%/text - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The text files are in %BUILDDIR%/text. - goto end -) - -if "%1" == "man" ( - %SPHINXBUILD% -b man %ALLSPHINXOPTS% %BUILDDIR%/man - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The manual pages are in %BUILDDIR%/man. - goto end -) - -if "%1" == "texinfo" ( - %SPHINXBUILD% -b texinfo %ALLSPHINXOPTS% %BUILDDIR%/texinfo - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The Texinfo files are in %BUILDDIR%/texinfo. - goto end -) - -if "%1" == "gettext" ( - %SPHINXBUILD% -b gettext %I18NSPHINXOPTS% %BUILDDIR%/locale - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The message catalogs are in %BUILDDIR%/locale. - goto end -) - -if "%1" == "changes" ( - %SPHINXBUILD% -b changes %ALLSPHINXOPTS% %BUILDDIR%/changes - if errorlevel 1 exit /b 1 - echo. - echo.The overview file is in %BUILDDIR%/changes. - goto end -) - -if "%1" == "linkcheck" ( - %SPHINXBUILD% -b linkcheck %ALLSPHINXOPTS% %BUILDDIR%/linkcheck - if errorlevel 1 exit /b 1 - echo. - echo.Link check complete; look for any errors in the above output ^ -or in %BUILDDIR%/linkcheck/output.txt. - goto end -) - -if "%1" == "doctest" ( - %SPHINXBUILD% -b doctest %ALLSPHINXOPTS% %BUILDDIR%/doctest - if errorlevel 1 exit /b 1 - echo. - echo.Testing of doctests in the sources finished, look at the ^ -results in %BUILDDIR%/doctest/output.txt. - goto end -) - -:end diff --git a/python/docSRC/matlab.rst b/python/docSRC/matlab.rst deleted file mode 100644 index fb7033e..0000000 --- a/python/docSRC/matlab.rst +++ /dev/null @@ -1,8 +0,0 @@ -MATLAB compatibility interface: the :mod:`matlab` module -======================================================== - -.. automodule:: astra.matlab - :members: - :undoc-members: - :show-inheritance: - diff --git a/python/docSRC/matrix.rst b/python/docSRC/matrix.rst deleted file mode 100644 index 6f11d8a..0000000 --- a/python/docSRC/matrix.rst +++ /dev/null @@ -1,8 +0,0 @@ -Sparse matrices: the :mod:`matrix` module -========================================= - -.. automodule:: astra.matrix - :members: - :undoc-members: - :show-inheritance: - diff --git a/python/docSRC/operator.rst b/python/docSRC/operator.rst deleted file mode 100644 index fe500ba..0000000 --- a/python/docSRC/operator.rst +++ /dev/null @@ -1,8 +0,0 @@ -OpTomo class: the :mod:`optomo` module -============================================== - -.. automodule:: astra.optomo - :members: - :undoc-members: - :show-inheritance: - diff --git a/python/docSRC/plugins.rst b/python/docSRC/plugins.rst deleted file mode 100644 index dc7c607..0000000 --- a/python/docSRC/plugins.rst +++ /dev/null @@ -1,8 +0,0 @@ -Plugins: the :mod:`plugin` module -========================================= - -.. automodule:: astra.plugin - :members: - :undoc-members: - :show-inheritance: - diff --git a/python/docSRC/projector.rst b/python/docSRC/projector.rst deleted file mode 100644 index b0854e8..0000000 --- a/python/docSRC/projector.rst +++ /dev/null @@ -1,8 +0,0 @@ -Projector object: the :mod:`projector` module -============================================= - -.. automodule:: astra.projector - :members: - :undoc-members: - :show-inheritance: - |
