Merge branch 'master' into parallel_vec

10 files changed, 138 insertions, 61 deletions

diff --git a/python/conda/astra-toolbox/build.sh b/python/conda/astra-toolbox/build.sh
index 951fd88..0468037 100644
--- a/python/conda/astra-toolbox/build.sh
+++ b/python/conda/astra-toolbox/build.sh
@@ -1,4 +1,10 @@
 #!/bin/sh
 
+case `uname` in
+  Darwin*)
+    CC="gcc -stdlib=libstdc++"
+    ;;
+esac
+
 cd $SRC_DIR/python/
-CPPFLAGS="-DASTRA_CUDA -DASTRA_PYTHON $CPPFLAGS -I$SRC_DIR/ -I$SRC_DIR/include -I$CUDA_ROOT/include" CC=$CC python ./builder.py build install
+CPPFLAGS="-DASTRA_CUDA -DASTRA_PYTHON $CPPFLAGS -I$SRC_DIR/ -I$SRC_DIR/include" CC=$CC python ./builder.py build install
diff --git a/python/conda/astra-toolbox/conda_build_config.yaml b/python/conda/astra-toolbox/conda_build_config.yaml
new file mode 100644
index 0000000..bd38ac6
--- /dev/null
+++ b/python/conda/astra-toolbox/conda_build_config.yaml
@@ -0,0 +1,9 @@
+python:
+  - 2.7
+  - 3.5
+  - 3.6
+
+numpy:
+  - 1.11
+  - 1.12
+  - 1.13
diff --git a/python/conda/astra-toolbox/meta.yaml b/python/conda/astra-toolbox/meta.yaml
index 942397e..88a9172 100644
--- a/python/conda/astra-toolbox/meta.yaml
+++ b/python/conda/astra-toolbox/meta.yaml
@@ -1,41 +1,41 @@
 package:
   name: astra-toolbox
-  version: '1.8'
+  version: '1.8.3'
 
 source:
   git_url: https://github.com/astra-toolbox/astra-toolbox.git
-  git_tag: v1.8
+  git_tag: v1.8.3
 
 build:
   number: 0
   script_env:
-    - CC # [not win]
-    - CUDA_ROOT # [not win]
+    - CC # [linux]
 
 test:
   imports:
     - astra
-
   requires:
     # To avoid large downloads just for testing after build phase
     - nomkl # [not win]
+    # import scipy.sparse.linalg fails with mkl-2017.0.4 on Windows
+    - mkl !=2017.0.4 # [win]
 
 requirements:
   build:
     - python
     - cython >=0.13
     - nomkl # [not win]
-    - numpy
+    - numpy {{ numpy }}
     - scipy
     - six
-    - libastra ==1.8
+    - libastra ==1.8.3
 
   run:
     - python
-    - numpy x.x
+    - {{ pin_compatible('numpy', max_pin='x.x') }}
     - scipy
     - six
-    - libastra ==1.8
+    - libastra ==1.8.3
 
 
 about:
diff --git a/python/conda/libastra/build.sh b/python/conda/libastra/build.sh
index 304c053..aa9a4ce 100644
--- a/python/conda/libastra/build.sh
+++ b/python/conda/libastra/build.sh
@@ -1,5 +1,19 @@
 #!/bin/sh
 
+case `uname` in
+  Darwin*)
+    CUDA_ROOT=/usr/local/cuda
+    CC=gcc
+    CXX=g++
+    ;;
+  Linux*)
+    [ -n "$cudatoolkit" ] || exit 1
+    CUDA_ROOT=/usr/local/cuda-$cudatoolkit
+    ;;
+esac
+
+[ -x "$CUDA_ROOT" ] || exit 1
+
 cd $SRC_DIR/build/linux
 
 $SRC_DIR/build/linux/autogen.sh
@@ -12,7 +26,11 @@ rm -f $CONDA_PREFIX/test.out
 
 $SRC_DIR/build/linux/configure --with-install-type=prefix --with-cuda=$CUDA_ROOT --prefix=$CONDA_PREFIX NVCCFLAGS="-ccbin $CC -I$CONDA_PREFIX/include $EXTRA_NVCCFLAGS" CC=$CC CXX=$CXX CPPFLAGS="-I$CONDA_PREFIX/include"
 
-make install-libraries
+# Clean, because we may be re-using this source tree when building
+# multiple variants of this conda package.
+make clean
+
+make -j $CPU_COUNT install-libraries
 
 
 test -d $CUDA_ROOT/lib64 && LIBPATH="$CUDA_ROOT/lib64" || LIBPATH="$CUDA_ROOT/lib"
@@ -22,8 +40,13 @@ case `uname` in
     cp -P $LIBPATH/libcudart.*.dylib $CONDA_PREFIX/lib
     cp -P $LIBPATH/libcufft.*.dylib $CONDA_PREFIX/lib
     ;;
-  *)
-    cp -P $LIBPATH/libcudart.so.* $CONDA_PREFIX/lib
-    cp -P $LIBPATH/libcufft.so.* $CONDA_PREFIX/lib
+  Linux*)
+    if [ "$cudatoolkit" = "7.0" ]; then
+      # For some reason conda-build adds these symlinks automatically for
+      # cudatoolkit-5.5 and 6.0, but not 7.0. For 7.5 these symlinks are not
+      # necessary, and for 8.0 the cudatoolkit packages includes them.
+      ln -T -s libcudart.so.7.0.28 $CONDA_PREFIX/lib/libcudart.so.7.0
+      ln -T -s libcufft.so.7.0.35 $CONDA_PREFIX/lib/libcufft.so.7.0
+    fi
     ;;
 esac
diff --git a/python/conda/libastra/linux_build_config.yaml b/python/conda/libastra/linux_build_config.yaml
new file mode 100644
index 0000000..c5d2319
--- /dev/null
+++ b/python/conda/libastra/linux_build_config.yaml
@@ -0,0 +1,6 @@
+cudatoolkit:
+  - 5.5
+  - 6.0
+  - 7.0
+  - 7.5
+  - 8.0
diff --git a/python/conda/libastra/meta.yaml b/python/conda/libastra/meta.yaml
index 68cf47a..e4622b7 100644
--- a/python/conda/libastra/meta.yaml
+++ b/python/conda/libastra/meta.yaml
@@ -1,17 +1,16 @@
 package:
   name: libastra
-  version: '1.8'
+  version: '1.8.3'
 
 source:
   git_url: https://github.com/astra-toolbox/astra-toolbox.git
-  git_tag: v1.8
+  git_tag: v1.8.3
 
 build:
   number: 0
   script_env:
-    - CC # [not win]
-    - CXX # [not win]
-    - CUDA_ROOT # [not win]
+    - CC # [linux]
+    - CXX # [linux]
 
 requirements:
   build:
@@ -20,15 +19,13 @@ requirements:
     - automake # [osx]
     - autoconf # [osx]
     - libtool # [osx]
+    - cudatoolkit {{ cudatoolkit }} # [linux]
 
   run:
     - vs2015_runtime # [win]
+    - cudatoolkit {{ cudatoolkit }} # [linux]
 
 about:
   home: http://www.astra-toolbox.com
   license: GPLv3
   summary: 'The ASTRA Toolbox is a Python toolbox of high-performance GPU primitives for 2D and 3D tomography.'
-
-# See
-# http://docs.continuum.io/conda/build.html for
-# more information about meta.yaml
diff --git a/python/conda/linux_release/buildenv/Dockerfile b/python/conda/linux_release/buildenv/Dockerfile
index c73e4b9..17e9c5b 100644
--- a/python/conda/linux_release/buildenv/Dockerfile
+++ b/python/conda/linux_release/buildenv/Dockerfile
@@ -1,15 +1,55 @@
-FROM debian:7
-ENV PATH /root/miniconda3/bin:$PATH
+FROM debian:7 AS BUILDBASE
 ENV DEBIAN_FRONTEND noninteractive
-# http://developer.download.nvidia.com/compute/cuda/5_5/rel/installers/cuda_5.5.22_linux_64.run
-ADD cuda_5.5.22_linux_64.run /root/
-# https://repo.continuum.io/miniconda/Miniconda3-4.2.12-Linux-x86_64.sh
-ADD Miniconda3-4.2.12-Linux-x86_64.sh /root/
-RUN apt-get update
-RUN apt-get install -y perl-modules build-essential autoconf libtool automake libboost-dev git
-RUN /bin/bash /root/Miniconda3-4.2.12-Linux-x86_64.sh -b
-RUN /bin/bash /root/cuda_5.5.22_linux_64.run -toolkit -silent
+RUN apt-get update && apt-get install -y perl-modules build-essential autoconf libtool automake libboost-dev git && rm -rf /var/lib/apt/lists/*
+
+FROM BUILDBASE AS CUDA80
+RUN touch /root/cuda80
+COPY cuda_8.0.61_375.26_linux-run /root
+RUN /bin/bash /root/cuda_8.0.61_375.26_linux-run --toolkit --silent && \
+	rm -f /root/cuda_8.0.61_375.26_linux-run
+COPY cuda_8.0.61.2_linux-run /root
+RUN /bin/bash /root/cuda_8.0.61.2_linux-run --silent --accept-eula && \
+	rm -f /root/cuda_8.0.61.2_linux-run
+
+FROM BUILDBASE AS CUDA75
+RUN touch /root/cuda75
+COPY cuda_7.5.18_linux.run /root
+RUN /bin/bash /root/cuda_7.5.18_linux.run --toolkit --silent && \
+	rm -f /root/cuda_7.5.18_linux.run
+
+FROM BUILDBASE AS CUDA70
+RUN touch /root/cuda70
+COPY cuda_7.0.28_linux.run /root
+RUN /bin/bash /root/cuda_7.0.28_linux.run -toolkit -silent && \
+	rm -f /root/cuda_7.0.28_linux.run
+
+COPY cufft_patch_linux.tar.gz /root
+RUN cd /usr/local/cuda-7.0 && \
+	tar xf /root/cufft_patch_linux.tar.gz && \
+	rm -f /root/cufft_patch_linux.tar.gz
+
+FROM BUILDBASE AS CUDA60
+RUN touch /root/cuda60
+COPY cuda_6.0.37_linux_64.run /root
+RUN /bin/bash /root/cuda_6.0.37_linux_64.run -toolkit -silent && \
+	rm -f /root/cuda_6.0.37_linux_64.run
+
+FROM BUILDBASE AS CUDA55
+RUN touch /root/cuda55
+COPY cuda_5.5.22_linux_64.run /root
+RUN /bin/bash /root/cuda_5.5.22_linux_64.run -toolkit -silent && \
+	rm /root/cuda_5.5.22_linux_64.run
+
+FROM BUILDBASE
+RUN touch /root/cuda
+COPY --from=CUDA80 /usr/local/cuda-8.0 /usr/local/cuda-8.0
+COPY --from=CUDA75 /usr/local/cuda-7.5 /usr/local/cuda-7.5
+COPY --from=CUDA70 /usr/local/cuda-7.0 /usr/local/cuda-7.0
+COPY --from=CUDA60 /usr/local/cuda-6.0 /usr/local/cuda-6.0
+COPY --from=CUDA55 /usr/local/cuda-5.5 /usr/local/cuda-5.5
+
+ENV PATH /root/miniconda3/bin:$PATH
+COPY Miniconda3-4.3.27.1-Linux-x86_64.sh /root/
+RUN /bin/bash /root/Miniconda3-4.3.27.1-Linux-x86_64.sh -b && \
+	rm -f /root/Miniconda3*
 RUN conda install -y conda-build
-ENV CUDA_ROOT /usr/local/cuda
-ENV CC gcc
-ENV CXX g++
diff --git a/python/conda/linux_release/buildenv/build.sh b/python/conda/linux_release/buildenv/build.sh
new file mode 100644
index 0000000..1cc0830
--- /dev/null
+++ b/python/conda/linux_release/buildenv/build.sh
@@ -0,0 +1,13 @@
+#!/bin/sh
+
+export CC=gcc
+export CXX=g++
+
+cd /root
+git clone --depth 1 --branch master https://github.com/astra-toolbox/astra-toolbox
+[ $# -eq 0 ] || perl -pi -e "s/^(\s*number:\s*)[0-9]+$/\${1}$1/" astra-toolbox/python/conda/libastra/meta.yaml astra-toolbox/python/conda/astra-toolbox/meta.yaml
+
+conda-build -m astra-toolbox/python/conda/libastra/linux_build_config.yaml astra-toolbox/python/conda/libastra
+conda-build astra-toolbox/python/conda/astra-toolbox
+
+cp /root/miniconda3/conda-bld/linux-64/*astra* /out
diff --git a/python/conda/linux_release/builder/Dockerfile b/python/conda/linux_release/builder/Dockerfile
deleted file mode 100644
index 2404609..0000000
--- a/python/conda/linux_release/builder/Dockerfile
+++ /dev/null
@@ -1,17 +0,0 @@
-FROM astra-build-env
-ARG BUILD_NUMBER=
-WORKDIR /root
-RUN git clone --depth 1 https://github.com/astra-toolbox/astra-toolbox
-RUN [ -z $BUILD_NUMBER ] || perl -pi -e "s/^(\s*number:\s*)[0-9]+$/\${1}$BUILD_NUMBER/" astra-toolbox/python/conda/libastra/meta.yaml astra-toolbox/python/conda/astra-toolbox/meta.yaml
-RUN conda-build --python=3.5 astra-toolbox/python/conda/libastra
-RUN conda-build --python 2.7 --numpy 1.8 astra-toolbox/python/conda/astra-toolbox
-RUN conda-build --python 2.7 --numpy 1.9 astra-toolbox/python/conda/astra-toolbox
-RUN conda-build --python 2.7 --numpy 1.10 astra-toolbox/python/conda/astra-toolbox
-RUN conda-build --python 2.7 --numpy 1.11 astra-toolbox/python/conda/astra-toolbox
-RUN conda-build --python 2.7 --numpy 1.12 astra-toolbox/python/conda/astra-toolbox
-RUN conda-build --python 3.5 --numpy 1.9 astra-toolbox/python/conda/astra-toolbox
-RUN conda-build --python 3.5 --numpy 1.10 astra-toolbox/python/conda/astra-toolbox
-RUN conda-build --python 3.5 --numpy 1.11 astra-toolbox/python/conda/astra-toolbox
-RUN conda-build --python 3.5 --numpy 1.12 astra-toolbox/python/conda/astra-toolbox
-RUN conda-build --python 3.6 --numpy 1.11 astra-toolbox/python/conda/astra-toolbox
-RUN conda-build --python 3.6 --numpy 1.12 astra-toolbox/python/conda/astra-toolbox
diff --git a/python/conda/linux_release/release.sh b/python/conda/linux_release/release.sh
index cf62bd5..91c13e4 100644
--- a/python/conda/linux_release/release.sh
+++ b/python/conda/linux_release/release.sh
@@ -2,19 +2,19 @@
 
 D=`mktemp -d`
 
-[ -f buildenv/cuda_5.5.22_linux_64.run ] || (cd buildenv; wget http://developer.download.nvidia.com/compute/cuda/5_5/rel/installers/cuda_5.5.22_linux_64.run )
-[ -f buildenv/Miniconda3-4.2.12-Linux-x86_64.sh ] || (cd buildenv; wget https://repo.continuum.io/miniconda/Miniconda3-4.2.12-Linux-x86_64.sh )
+for F in https://repo.continuum.io/miniconda/Miniconda3-4.2.12-Linux-x86_64.sh  http://developer.download.nvidia.com/compute/cuda/5_5/rel/installers/cuda_5.5.22_linux_64.run http://developer.download.nvidia.com/compute/cuda/6_0/rel/installers/cuda_6.0.37_linux_64.run  http://developer.download.nvidia.com/compute/cuda/7_0/Prod/local_installers/cuda_7.0.28_linux.run http://developer.download.nvidia.com/compute/cuda/7_0/Prod/cufft_update/cufft_patch_linux.tar.gz http://developer.download.nvidia.com/compute/cuda/7.5/Prod/local_installers/cuda_7.5.18_linux.run https://developer.nvidia.com/compute/cuda/8.0/Prod2/local_installers/cuda_8.0.61_375.26_linux-run https://developer.nvidia.com/compute/cuda/8.0/Prod2/patches/2/cuda_8.0.61.2_linux-run; do
+	[ -f buildenv/`basename $F` ] || (cd buildenv; wget $F )
+done
 
 docker build -t astra-build-env buildenv
-#docker build --no-cache --build-arg=BUILD_NUMBER=0 -t astra-builder builder
-docker build --no-cache -t astra-builder builder
 
-docker run --name astra-build-cnt -v $D:/out:z astra-builder /bin/bash -c "cp /root/miniconda3/conda-bld/linux-64/*astra* /out"
+cp buildenv/build.sh $D
+
+docker run -v $D:/out:z astra-build-env /bin/bash /out/build.sh
+
+rm -f $D/build.sh
 
 mkdir -p pkgs
 mv $D/* pkgs
 rmdir $D
 
-docker rm astra-build-cnt
-docker rmi astra-builder
-